Different Roles of Environmental Selection, Dispersal, and Drift in the Assembly of Intestinal Microbial Communities of Freshwater Fish With and Without a Stomach

Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology

(2018) Elizabeth Theresa Miller et al.   TRENDS IN ECOLOGY & EVOLUTION

Functional diversity and redundancy across fish gut, sediment and water bacterial communities

(2017) Arthur Escalas et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes

(2016) Chenhong Zhang et al.   ISME Journal

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

Gut Microbiotas and Host Evolution: Scaling Up Symbiosis

(2016) Michael Shapira   TRENDS IN ECOLOGY & EVOLUTION

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

Testing the Neutral Theory of Biodiversity with Human Microbiome Datasets

(2016) Lianwei Li et al.   Scientific Reports

Combined effects of zooplankton grazing and dispersal on the diversity and assembly mechanisms of bacterial metacommunities

(2015) Mercè Berga et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

When do plant radiations influence community assembly? The importance of historical contingency in the race for niche space

(2015) Andrew J. Tanentzap et al.   NEW PHYTOLOGIST

Individuals in food webs: the relationships between trophic position, omnivory and among-individual diet variation

(2015) Richard Svanbäck et al.   OECOLOGIA

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

(2015) Lucas Sinclair et al.   PLoS One

Fate, activity, and impact of ingested bacteria within the human gut microbiota

(2015) Muriel Derrien et al.   TRENDS IN MICROBIOLOGY

The Evolution of Stomach Acidity and Its Relevance to the Human Microbiome

(2015) DeAnna E. Beasley et al.   PLoS One

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

Changes of the human gut microbiome induced by a fermented milk product

(2014) Patrick Veiga et al.   Scientific Reports

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)

(2013) Xuemei Li et al.   PLoS One

Taking a metagenomic view of human nutrition

(2012) Rachel J. Dutton et al.   CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE

Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals

(2012) Tiffanie M. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

CREST – Classification Resources for Environmental Sequence Tags

(2012) Anders Lanzén et al.   PLoS One

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Linking metacommunity theory and symbiont evolutionary ecology

(2012) Joseph R. Mihaljevic   TRENDS IN ECOLOGY & EVOLUTION

Programming of Host Metabolism by the Gut Microbiota

(2011) Fredrik Bäckhed   ANNALS OF NUTRITION AND METABOLISM

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Responses of Gut Microbiota to Diet Composition and Weight Loss in Lean and Obese Mice

(2011) Yann Ravussin et al.   Obesity

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Factors Affecting Winter Survival of Female Mallards in the Lower Mississippi Alluvial Valley

(2011) Bruce E. Davis et al.   WATERBIRDS

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Specialization of trophic position and habitat use by sticklebacks in an adaptive radiation

(2010) Blake Matthews et al.   ECOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Population Density Fluctuations Change the Selection Gradient in Eurasian Perch

(2009) Richard Svanbäck et al.   AMERICAN NATURALIST

Carbon and nitrogen stable isotope turnover rates and diet-tissue discrimination in Florida manatees (Trichechus manatus latirostris)

(2009) C. D. Alves-Stanley et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Using Phylogenetic, Functional and Trait Diversity to Understand Patterns of Plant Community Productivity

(2009) Marc W. Cadotte et al.   PLoS One

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Relations between nutritional condition and survival of North American elk Cervus elaphus

(2008) Louis C. Bender et al.   WILDLIFE BIOLOGY

Intraspecific competition drives multiple species resource polymorphism in fish communities

(2007) Richard Svanbäck et al.   OIKOS