Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Bipolar dispersal of red-snow algae

(2018) Takahiro Segawa et al.   Nature Communications

Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches

(2018) Jacob T. Nearing et al.   PeerJ

Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica

(2018) Kevin C. Lee et al.   Frontiers in Microbiology

Biogeography of cryoconite forming cyanobacteria on polar and Asian glaciers

(2017) Takahiro Segawa et al.   JOURNAL OF BIOGEOGRAPHY

On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria

(2017) Rochelle M. Soo et al.   SCIENCE

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Genomic mechanisms for cold tolerance and production of exopolysaccharides in the Arctic cyanobacterium Phormidesmis priestleyi BC1401

(2016) Nathan A. M. Chrismas et al.   BMC GENOMICS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake

(2015) Anne D. Jungblut et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple adaptations to polar and alpine environments within cyanobacteria: a phylogenomic and Bayesian approach

(2015) Nathan A. M. Chrismas et al.   Frontiers in Microbiology

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

(2014) Kenan Hadziavdic et al.   PLoS One

Ace Lake: three decades of research on a meromictic, Antarctic lake

(2014) Johanna Laybourn-Parry et al.   POLAR BIOLOGY

Bacterial succession in Antarctic soils of two glacier forefields on Larsemann Hills, East Antarctica

(2013) Felizitas Bajerski et al.   FEMS MICROBIOLOGY ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Molecular identification and phylogeny of an aquatic moss species in Antarctic lakes

(2013) Kengo Kato et al.   POLAR BIOLOGY

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis

(2012) Ryosuke Nakai et al.   POLAR BIOLOGY

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

The origin of multicellularity in cyanobacteria

(2011) Bettina E Schirrmeister et al.   BMC EVOLUTIONARY BIOLOGY

Low cyanobacterial diversity in biotopes of the Transantarctic Mountains and Shackleton Range (80-82°S), Antarctica

(2011) Rafael Fernandez-Carazo et al.   FEMS MICROBIOLOGY ECOLOGY

On dormancy strategies in tardigrades

(2011) Roberto Guidetti et al.   JOURNAL OF INSECT PHYSIOLOGY

Characterisation of the Nematode Community of a Low-Activity Cold Seep in the Recently Ice-Shelf Free Larsen B Area, Eastern Antarctic Peninsula

(2011) Freija Hauquier et al.   PLoS One

Microflorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses

(2011) Ryosuke Nakai et al.   POLAR BIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Microbial Community Structure, Pigment Composition, and Nitrogen Source of Red Snow in Antarctica

(2009) Masanori Fujii et al.   MICROBIAL ECOLOGY

Compartmentalized function through cell differentiation in filamentous cyanobacteria

(2009) Enrique Flores et al.   NATURE REVIEWS MICROBIOLOGY

Photophysiological responses of phytobenthic communities to the strong light and UV in Antarctic shallow lakes

(2009) Yukiko Tanabe et al.   POLAR BIOLOGY

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE