Identification of Early Warning Signals at the Critical Transition Point of Colorectal Cancer Based on Dynamic Network Analysis

Factors predicting recurrence after curative resection for rectal cancer: a 16-year study

(2019) Waad Farhat et al.   World Journal of Surgical Oncology

Random Walk with Restart on Multiplex and Heterogeneous Biological Networks

(2018) Alberto Valdeolivas et al.   BIOINFORMATICS

Dynamic network biomarker indicates pulmonary metastasis at the tipping point of hepatocellular carcinoma

(2018) Biwei Yang et al.   Nature Communications

Breast Cancers Activate Stromal Fibroblast-Induced Suppression of Progenitors in Adjacent Normal Tissue

(2018) Sumanta Chatterjee et al.   Stem Cell Reports

Detection for disease tipping points by landscape dynamic network biomarkers

(2018) Xiaoping Liu et al.   National Science Review

POFUT1 as a Promising Novel Biomarker of Colorectal Cancer

(2018) Julien Chabanais et al.   Cancers

Dynamic versus static biomarkers in cancer immune checkpoint blockade: unravelling complexity

(2017) W. Joost Lesterhuis et al.   NATURE REVIEWS DRUG DISCOVERY

Dysfunction of PLA2G6 and CYP2C44-associated network signals imminent carcinogenesis from chronic inflammation to hepatocellular carcinoma

(2017) Meiyi Li et al.   Journal of Molecular Cell Biology

Percolation transition of cooperative mutational effects in colorectal tumorigenesis

(2017) Dongkwan Shin et al.   Nature Communications

Decoy receptor 1 (DCR1) promoter hypermethylation and response to irinotecan in metastatic colorectal cancer

(2017) Linda J.W. Bosch et al.   Oncotarget

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers

(2017) Xiaoping Liu et al.   PLoS Computational Biology

Symptomatic and Asymptomatic Colon Cancer Recurrence: A Multicenter Cohort Study

(2016) L. A. M. Duineveld et al.   ANNALS OF FAMILY MEDICINE

Early Detection of Sepsis—A Role for Network Physiology?

(2016) J. Randall Moorman et al.   CRITICAL CARE MEDICINE

Focus on the emerging new fields of network physiology and network medicine

(2016) Plamen Ch Ivanov et al.   NEW JOURNAL OF PHYSICS

New trends in molecular and cellular biomarker discovery for colorectal cancer

(2016) Parisa Aghagolzadeh et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process

(2016) Angélique Richard et al.   PLOS BIOLOGY

Cell Fate Decision as High-Dimensional Critical State Transition

(2016) Mitra Mojtahedi et al.   PLOS BIOLOGY

Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization

(2015) Zhi-Qin Zhao et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Systematic Identification of Molecular Links between Core and Candidate Genes in Breast Cancer

(2015) Rodrigo Arroyo et al.   JOURNAL OF MOLECULAR BIOLOGY

The consensus molecular subtypes of colorectal cancer

(2015) Justin Guinney et al.   NATURE MEDICINE

DriverDBv2: a database for human cancer driver gene research

(2015) I-Fang Chung et al.   NUCLEIC ACIDS RESEARCH

Extreme multifunctional proteins identified from a human protein interaction network

(2015) Charles E. Chapple et al.   Nature Communications

Network Physiology: How Organ Systems Dynamically Interact

(2015) Ronny P. Bartsch et al.   PLoS One

Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases

(2014) D. Smedley et al.   BIOINFORMATICS

The Functional Landscape of Hsp27 Reveals New Cellular Processes such as DNA Repair and Alternative Splicing and Proposes Novel Anticancer Targets

(2014) Maria Katsogiannou et al.   MOLECULAR & CELLULAR PROTEOMICS

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis

(2013) M. Li et al.   BRIEFINGS IN BIOINFORMATICS

Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers

(2013) Rui Liu et al.   MEDICINAL RESEARCH REVIEWS

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

(2013) J. Gao et al.   Science Signaling

Disease gene identification by random walk on multigraphs merging heterogeneous genomic and phenotype data

(2012) Yongjin Li et al.   BMC GENOMICS

Opportunities and challenges of disease biomarkers: a new section in the journal of translational medicine

(2012) Xiangdong Wang et al.   Journal of Translational Medicine

Network physiology reveals relations between network topology and physiological function

(2012) Amir Bashan et al.   Nature Communications

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

(2012) Luonan Chen et al.   Scientific Reports

Identifying critical transitions and their leading biomolecular networks in complex diseases

(2012) Rui Liu et al.   Scientific Reports

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

DA DA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

(2011) Sinan Erten et al.   BioData Mining

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network

(2010) Yongjin Li et al.   BIOINFORMATICS

DNA methylation markers in colorectal cancer

(2010) Myoung Sook Kim et al.   CANCER AND METASTASIS REVIEWS

Gene Expression Profiles of Estrogen Receptor-Positive and Estrogen Receptor-Negative Breast Cancers Are Detectable in Histologically Normal Breast Epithelium

(2010) K. Graham et al.   CLINICAL CANCER RESEARCH

Microarray analysis identifies altered regulation of nuclear receptor family members in the pre-disease state of multiple sclerosis

(2010) Anat Achiron et al.   NEUROBIOLOGY OF DISEASE

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Properties and identification of human protein drug targets

(2009) Tala M. Bakheet et al.   BIOINFORMATICS

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Stromal gene expression predicts clinical outcome in breast cancer

(2008) Greg Finak et al.   NATURE MEDICINE

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH