Early Diagnosis of Hepatocellular Carcinoma Using Machine Learning Method

Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer

(2020) Jie Sun et al.   Journal for ImmunoTherapy of Cancer

Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps

(2020) Dong Si et al.   Scientific Reports

A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer

(2019) Haidan Yan et al.   Journal of Translational Medicine

Morphological Segmentation Analysis and Texture-based Support Vector Machines Classification on Mice Liver Fibrosis Microscopic Images

(2019) Yu Wang et al.   Current Bioinformatics

Hepatocellular Carcinoma

(2019) Augusto Villanueva   NEW ENGLAND JOURNAL OF MEDICINE

A qualitative transcriptional signature for the early diagnosis of colorectal cancer

(2019) Qingzhou Guan et al.   CANCER SCIENCE

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation

(2019) Balachandran Manavalan et al.   Molecular Therapy-Nucleic Acids

AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine

(2019) Chaolu Meng et al.   Frontiers in Bioengineering and Biotechnology

Computational identification of mutator-derived lncRNA signatures of genome instability for improving the clinical outcome of cancers: a case study in breast cancer

(2019) Siqi Bao et al.   BRIEFINGS IN BIOINFORMATICS

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N4-methylcytosine Sites in the Mouse Genome

(2019) Manavalan et al.   Cells

Taxonomy dimension reduction for colorectal cancer prediction

(2019) Kaiyang Qu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The application of machine learning to disease diagnosis and treatment

(2019) Quan Zou et al.   MATHEMATICAL BIOSCIENCES

SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome

(2019) Shaherin Basith et al.   Molecular Therapy-Nucleic Acids

Quantitative or qualitative transcriptional diagnostic signatures? A case study for colorectal cancer

(2018) Qingzhou Guan et al.   BMC GENOMICS

A Weighted Association Rule Mining Method for Predicting HCV-Human Protein Interactions

(2018) Murugan Indhumathy et al.   Current Bioinformatics

Cancer Diagnosis Through IsomiR Expression with Machine Learning Method

(2018) Zhijun Liao et al.   Current Bioinformatics

Discriminating Ramos and Jurkat Cells with Image Textures from Diffraction Imaging Flow Cytometry Based on a Support Vector Machine

(2018) Ning Zhang et al.   Current Bioinformatics

When and how should we perform a biopsy for HCC in patients with liver cirrhosis in 2018? A review

(2018) Francesco Paolo Russo et al.   DIGESTIVE AND LIVER DISEASE

Machine-Learning-Based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency with Improved Accuracy

(2018) Balachandran Manavalan et al.   JOURNAL OF PROTEOME RESEARCH

Identification of anti-SF3B1 autoantibody as a diagnostic marker in patients with hepatocellular carcinoma

(2018) Hai-Min Hwang et al.   Journal of Translational Medicine

A qualitative signature for early diagnosis of hepatocellular carcinoma based on relative expression orderings

(2018) Lu Ao et al.   LIVER INTERNATIONAL

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine

(2018) Balachandran Manavalan et al.   Frontiers in Microbiology

Predicting Enhancers from Multiple Cell Lines and Tissues across Different Developmental Stages

(2018) Hongda Bu et al.   Current Bioinformatics

Survey of Machine Learning Techniques in Drug Discovery

(2018) Natalie Stephenson et al.   CURRENT DRUG METABOLISM

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

(2018) Balachandran Manavalan et al.   BIOINFORMATICS

Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique

(2018) Fu-Ying Dao et al.   BIOINFORMATICS

A brief survey of machine learning methods in protein sub-Golgi localization

(2018) Wuritu Yang et al.   Current Bioinformatics

LAMC1 mRNA promotes malignancy of hepatocellular carcinoma cells by competing for MicroRNA-124 binding with CD151

(2017) Zhan-Po Yang et al.   IUBMB LIFE

Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma

(2017) Meng Zhou et al.   Molecular Cancer

ProLanGO: Protein Function Prediction Using Neural Machine Translation Based on a Recurrent Neural Network

(2017) Renzhi Cao et al.   MOLECULES

The diagnosis and treatment of hepatocellular carcinoma

(2017) Justin Hartke et al.   SEMINARS IN DIAGNOSTIC PATHOLOGY

A two-step discriminated method to identify thermophilic proteins

(2017) Hua Tang et al.   International Journal of Biomathematics

Circumvent the uncertainty in the applications of transcriptional signatures to tumor tissues sampled from different tumor sites

(2017) Jun Cheng et al.   Oncotarget

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

(2017) Balachandran Manavalan et al.   Oncotarget

MLACP: machine-learning-based prediction of anticancer peptides

(2017) Balachandran Manavalan et al.   Oncotarget

Diagnostic specificity and sensitivity of PIVKAII, GP3, CSTB, SCCA1 and HGF for the diagnosis of hepatocellular carcinoma in patients with alcoholic liver cirrhosis

(2017) Adriana Unić et al.   ANNALS OF CLINICAL BIOCHEMISTRY

Methylenetetrahydrofolate dehydrogenase 2 overexpression is associated with tumor aggressiveness and poor prognosis in hepatocellular carcinoma

(2016) Xincheng Liu et al.   DIGESTIVE AND LIVER DISEASE

Hepatic miR-126 is a potential plasma biomarker for detection of hepatitis B virus infected hepatocellular carcinoma

(2016) Amit Ghosh et al.   INTERNATIONAL JOURNAL OF CANCER

An individualized prognostic signature for gastric cancer patients treated with 5-Fluorouracil-based chemotherapy and distinct multi-omics characteristics of prognostic groups

(2016) Xiangyu Li et al.   Oncotarget

An individualized prognostic signature and multi‑omics distinction for early stage hepatocellular carcinoma patients with surgical resection

(2016) Lu Ao et al.   Oncotarget

A rank-based transcriptional signature for predicting relapse risk of stage II colorectal cancer identified with proper data sources

(2016) Wenyuan Zhao et al.   Oncotarget

Robust transcriptional tumor signatures applicable to both formalin-fixed paraffin-embedded and fresh-frozen samples

(2016) Rou Chen et al.   Oncotarget

Differential expression analysis for individual cancer samples based on robust within-sample relative gene expression orderings across multiple profiling platforms

(2016) Qingzhou Guan et al.   Oncotarget

Construction and Identification of the RNAi Recombinant Lentiviral Vector Targeting Human DEPDC7 Gene

(2016) Zhijun Liao et al.   Interdisciplinary Sciences-Computational Life Sciences

AFP (alpha fetoprotein): Who are you in gastrology?

(2015) Wenhui Sun et al.   CANCER LETTERS

Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding

(2015) Shashank Tripathi et al.   Cell Host & Microbe

Upregulation of Heat Shock Proteins (HSPA12A, HSP90B1, HSPA4, HSPA5 and HSPA6) in Tumour Tissues Is Associated with Poor Outcomes from HBV-Related Early-Stage Hepatocellular Carcinoma

(2015) Zongguo Yang et al.   International Journal of Medical Sciences

A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer

(2015) Meng Zhou et al.   Journal of Translational Medicine

Expression and prognostic role of ubiquitination factor E4B in primary hepatocellular carcinoma

(2015) Xiao-Fei Zhang et al.   MOLECULAR CARCINOGENESIS

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

(2015) Antonio Colaprico et al.   NUCLEIC ACIDS RESEARCH

Review The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge

(2015) Katarzyna Tomczak et al.   Wspolczesna Onkologia-Contemporary Oncology

Tamoxifen therapy benefit predictive signature coupled with prognostic signature of post-operative recurrent risk for early stage ER+ breast cancer

(2015) Hao Cai et al.   Oncotarget

Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

(2015) Fei Gao et al.   Clinical Epigenetics

Individual-level analysis of differential expression of genes and pathways for personalized medicine

(2014) Hongwei Wang et al.   BIOINFORMATICS

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines

(2014) Renzhi Cao et al.   BMC BIOINFORMATICS

Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma

(2014) Lin Wei et al.   BMC GENOMICS

Relative Expression Analysis for Molecular Cancer Diagnosis and Prognosis

(2014) James A. Eddy et al.   TECHNOLOGY IN CANCER RESEARCH & TREATMENT

Rank-based predictors for response and prognosis of neoadjuvant taxane-anthracycline-based chemotherapy in breast cancer

(2013) Lin Zhang et al.   BREAST CANCER RESEARCH AND TREATMENT

A relative ordering-based predictor for tamoxifen-treated estrogen receptor-positive breast cancer patients: multi-laboratory cohort validation

(2013) Xianxiao Zhou et al.   BREAST CANCER RESEARCH AND TREATMENT

Downregulation of the microRNA biogenesis components and its association with poor prognosis in hepatocellular carcinoma

(2013) Noriyuki Kitagawa et al.   CANCER SCIENCE

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Hepatocellular Carcinoma

(2011) Hashem B. El-Serag   NEW ENGLAND JOURNAL OF MEDICINE

Identifying Genes for Establishing a Multigenic Test for Hepatocellular Carcinoma Surveillance in Hepatitis C Virus-Positive Cirrhotic Patients

(2009) K. J. Archer et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Prevention of hepatocellular carcinoma in the Asia-Pacific region: Consensus statements

(2009)   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY