DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems

Birds and bats contribute to natural regulation of the millet head miner in tree-crop agroforestry systems

(2020) Ahmadou Sow et al.   CROP PROTECTION

One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies

(2019) Emmanuel Corse et al.   Ecology and Evolution

The global burden of pathogens and pests on major food crops

(2019) Serge Savary et al.   Nature Ecology & Evolution

DNA sequencing to help identify crop pests and their natural enemies in agro-ecosystems: The case of the millet head miner Heliocheilus albipunctella (Lepidoptera: Noctuidae) in sub-Saharan Africa

(2018) Ahmadou Sow et al.   BIOLOGICAL CONTROL

First records of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), in Senegal

(2018) Thierry Brévault et al.   ENTOMOLOGIA GENERALIS

Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis

(2018) Maxime Galan et al.   Molecular Ecology Resources

Spider Communities and Biological Control in Native Habitats Surrounding Greenhouses

(2018) Belén Cotes et al.   Insects

Arthropod pest complex and associated damage in field-grown tomato in Senegal

(2018) Mamadou Diatte et al.   INTERNATIONAL JOURNAL OF TROPICAL INSECT SCIENCE

Pest management: Reconciling farming practices and natural regulations

(2018) Thierry Brévault et al.   CROP PROTECTION

Effect of landscape diversity and crop management on the control of the millet head miner, Heliocheilus albipunctella (Lepidoptera: Noctuidae) by natural enemies

(2018) Valérie Soti et al.   BIOLOGICAL CONTROL

A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies

(2017) Emmanuel Corse et al.   Molecular Ecology Resources

Combining noninvasive genetics and a new mammalian sex-linked marker provides new tools to investigate population size, structure and individual behaviour: An application to bats

(2017) Diane Zarzoso-Lacoste et al.   Molecular Ecology Resources

Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents

(2016) Débora P. Paula et al.   PLoS One

16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife

(2016) Maxime Galan et al.   mSystems

Agricultural Land Use Determines the Trait Composition of Ground Beetle Communities

(2016) Helena I. Hanson et al.   PLoS One

DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents

(2015) C M Lopes et al.   HEREDITY

A new method to identify the endangered Pyrenean desman ( Galemys pyrenaicus ) and to study its diet, using next generation sequencing from faeces

(2015) François Gillet et al.   MAMMALIAN BIOLOGY

GenBank

(2015) Karen Clark et al.   NUCLEIC ACIDS RESEARCH

DNA metabarcoding illuminates dietary niche partitioning by African large herbivores

(2015) Tyler R. Kartzinel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of plant resources by an omnivorous predator and the consequences for effective predation

(2014) D.A. Maselou et al.   BIOLOGICAL CONTROL

Knowing your enemies: Integrating molecular and ecological methods to assess the impact of arthropod predators on crop pests

(2014) Michael J. Furlong   Insect Science

Special issue on molecular detection of trophic interactions: Unpicking the tangled bank

(2014) William O. C. Symondson et al.   MOLECULAR ECOLOGY

Cover Cropping Alters the Diet of Arthropods in a Banana Plantation: A Metabarcoding Approach

(2014) Gregory Mollot et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

A Multi-Approach Study to Delineate Interactions Between Carabid Beetles and Soybean Aphids

(2013) Annabelle Firlej et al.   ENVIRONMENTAL ENTOMOLOGY

The detectability half-life in arthropod predator-prey research: what it is, why we need it, how to measure it, and how to use it

(2013) Matthew H. Greenstone et al.   MOLECULAR ECOLOGY

Crop pests: Under attack

(2013) Amy Maxmen   NATURE

The role of replicates for error mitigation in next-generation sequencing

(2013) Kimberly Robasky et al.   NATURE REVIEWS GENETICS

Current status and potential of conservation biological control for agriculture in the developing world

(2012) Kris A.G. Wyckhuys et al.   BIOLOGICAL CONTROL

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Removing external DNA contamination from arthropod predators destined for molecular gut-content analysis

(2012) MATTHEW H. GREENSTONE et al.   Molecular Ecology Resources

DNA-based analysis of regurgitates: a noninvasive approach to examine the diet of invertebrate consumers

(2012) THOMAS WALDNER et al.   Molecular Ecology Resources

Ecosystem services provided by bats

(2011) Thomas H. Kunz et al.   Annals of the New York Academy of Sciences

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Prey DNA detection success following digestion by intraguild predators: influence of prey and predator species

(2011) A.-È. GAGNON et al.   Molecular Ecology Resources

Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing

(2011) Kristine Bohmann et al.   PLoS One

Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers

(2010) R. ANDREW KING et al.   MOLECULAR ECOLOGY

Interactions among predators and the cascading effects of vertebrate insectivores on arthropod communities and plants

(2010) K. A. Mooney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spider predators of lepidopteran eggs in south Texas field crops

(2008) Robert S. Pfannenstiel   BIOLOGICAL CONTROL

Recent advances in conservation biological control of arthropods by arthropods

(2008) Mattias Jonsson et al.   BIOLOGICAL CONTROL

INVITED REVIEW: Molecular analysis of predation: a review of best practice for DNA-based approaches

(2008) R. A. KING et al.   MOLECULAR ECOLOGY

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION