Crystal structures of REF6 and its complex with DNA reveal diverse recognition mechanisms

The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor

(2019) Shuzhi Zheng et al.   Nature Communications

DNA methylation repels targeting of Arabidopsis REF6

(2019) Qi Qiu et al.   Nature Communications

Verification of DNA motifs in Arabidopsis using CRISPR/Cas9-mediated mutagenesis

(2018) Chenlong Li et al.   PLANT BIOTECHNOLOGY JOURNAL

DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants

(2018) Chao Xu et al.   STRUCTURE

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding

(2017) Tsu-Pei Chiu et al.   NUCLEIC ACIDS RESEARCH

Role for first zinc finger of WT1 in DNA sequence specificity: Denys–Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites

(2017) Dongxue Wang et al.   NUCLEIC ACIDS RESEARCH

Two-domain analysis of JmjN-JmjC and PHD-JmjC lysine demethylases: Detecting an inter-domain evolutionary stress

(2017) Patrick Slama   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Selective inhibition of cancer cells by enzyme-induced gain of function of phosphorylated melittin analogues

(2017) Qian-Qian Li et al.   Chemical Science

Human apo-SRP72 and SRP68/72 complex structures reveal the molecular basis of protein translocation

(2017) Yina Gao et al.   Journal of Molecular Cell Biology

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

(2017) Jill Trewhella et al.   Acta Crystallographica Section D-Structural Biology

Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem

(2016) Youbong Hyun et al.   DEVELOPMENTAL CELL

Structural Analyses of Zinc Finger Domains for Specific Interactions with DNA

(2016) Ki Seong Eom et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis

(2016) Xia Cui et al.   NATURE GENETICS

Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis

(2016) Chenlong Li et al.   NATURE GENETICS

Performing protein crosslinking using gas-phase cleavable chemical crosslinkers and liquid chromatography-tandem mass spectrometry

(2015) Andrew S. Argo et al.   METHODS

Histone Demethylase LSD2 Acts as an E3 Ubiquitin Ligase and Inhibits Cancer Cell Growth through Promoting Proteasomal Degradation of OGT

(2015) Yi Yang et al.   MOLECULAR CELL

A systematic survey of the Cys2His2 zinc finger DNA-binding landscape

(2015) Anton V. Persikov et al.   NUCLEIC ACIDS RESEARCH

The amino-terminal structure of human fragile X mental retardation protein obtained using precipitant-immobilized imprinted polymers

(2015) Yufeng Hu et al.   Nature Communications

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator

(2015) Zengqin Deng et al.   Nature Communications

C-terminal domains of histone demethylase JMJ14 interact with a pair of NAC transcription factors to mediate specific chromatin association

(2015) Shuaibin Zhang et al.   Cell Discovery

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence

(2014) Hideharu Hashimoto et al.   GENES & DEVELOPMENT

Structural and Functional Insights into the Human Börjeson-Forssman-Lehmann Syndrome-associated Protein PHF6

(2014) Zhonghua Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

(2014) Pedro Crevillén et al.   NATURE

Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis

(2014) Xingliang Hou et al.   Nature Communications

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

(2013) Tianyin Zhou et al.   NUCLEIC ACIDS RESEARCH

Structure-function analysis reveals a novel mechanism for regulation of histone demethylase LSD2/AOF1/KDM1b

(2012) Qi Zhang et al.   CELL RESEARCH

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

(2012) C. Smaczniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex Structures of the Abscisic Acid Receptor PYL3/RCAR13 Reveal a Unique Regulatory Mechanism

(2012) Xingliang Zhang et al.   STRUCTURE

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Discovery of Zinc Fingers and Their Applications in Gene Regulation and Genome Manipulation

(2010) Aaron Klug   Annual Review of Biochemistry

Origins of Specificity in Protein-DNA Recognition

(2010) Remo Rohs et al.   Annual Review of Biochemistry

BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis

(2009) S. S. Nielsen et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Conformational analysis of nucleic acids revisited: Curves+

(2009) R. Lavery et al.   NUCLEIC ACIDS RESEARCH

The unique structure of A-tracts and intrinsic DNA bending

(2009) Tali E. Haran et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Comparative Analysis of JmjC Domain-containing Proteins Reveals the Potential Histone Demethylases inArabidopsisand Rice

(2008) Falong Lu et al.   Journal of Integrative Plant Biology

Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis

(2008) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA