4.6 Article

High-Capacity Adenoviral Vectors Permit Robust and Versatile Testing of DMD Gene Repair Tools and Strategies in Human Cells

Journal

CELLS
Volume 9, Issue 4, Pages -

Publisher

MDPI
DOI: 10.3390/cells9040869

Keywords

gene editing; gene repair; CRISPR-Cas9; multiplexing; high-specificity nucleases; high-capacity adenoviral vectors; retargeting; Duchenne muscular dystrophy

Categories

Funding

  1. Dutch Prinses Beatrix Spierfonds [W.OR16-13]
  2. Dutch Duchenne Parent Project [17.012]
  3. European Community [222878]

Ask authors/readers for more resources

Duchenne muscular dystrophy (DMD) is a fatal X-linked muscle wasting disorder arising from mutations in the similar to 2.4 Mb dystrophin-encoding DMD gene. RNA-guided CRISPR-Cas9 nucleases (RGNs) are opening new DMD therapeutic routes whose bottlenecks include delivering sizable RGN complexes for assessing their effects on human genomes and testing ex vivo and in vivo DMD-correcting strategies. Here, high-capacity adenoviral vectors (HC-AdVs) encoding single or dual high-specificity RGNs with optimized components were investigated for permanently repairing defective DMD alleles either through exon 51-targeted indel formation or major mutational hotspot excision (>500 kb), respectively. Firstly, we establish that, at high doses, third-generation HC-AdVs lacking all viral genes are significantly less cytotoxic than second-generation adenoviral vectors deleted in E1 and E2A. Secondly, we demonstrate that genetically retargeted HC-AdVs can correct up to 42% +/- 13% of defective DMD alleles in muscle cell populations through targeted removal of the major mutational hotspot, in which over 60% of frame-shifting large deletions locate. Both DMD gene repair strategies tested readily led to the detection of Becker-like dystrophins in unselected muscle cell populations, leading to the restoration of beta-dystroglycan at the plasmalemma of differentiated muscle cells. Hence, HC-AdVs permit the effective assessment of DMD gene-editing tools and strategies in dystrophin-defective human cells while broadening the gamut of DMD-correcting agents.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Integrating gene delivery and gene-editing technologies by adenoviral vector transfer of optimized CRISPR-Cas9 components

Ignazio Maggio, Hidde A. Zittersteijn, Qian Wang, Jin Liu, Josephine M. Janssen, Ivan Toral Ojeda, Silvere M. van der Maarel, Arjan C. Lankester, Rob C. Hoeben, Manuel A. F. V. Goncalves

GENE THERAPY (2020)

Article Biochemistry & Molecular Biology

Expanding the editable genome and CRISPR-Cas9 versatility using DNA cutting-free gene targeting based on in trans paired nicking

Xiaoyu Chen, Francesca Tasca, Qian Wang, Jin Liu, Josephine M. Janssen, Marcella D. Brescia, Milena Bellin, Karoly Szuhai, Josefin Kenrick, Richard L. Frock, Manuel A. F. Goncalves

NUCLEIC ACIDS RESEARCH (2020)

Review Endocrinology & Metabolism

A primer to gene therapy: Progress, prospects, and problems

Hidde A. Zittersteijn, Manuel A. F. V. Goncalves, Rob C. Hoeben

Summary: Genetic therapies based on gene addition have achieved clinical successes, especially using viral vector-based gene delivery systems. Emerging gene editing approaches like CRISPR-Cas9 nucleases and new nickases are also gaining traction in the field.

JOURNAL OF INHERITED METABOLIC DISEASE (2021)

Article Biochemistry & Molecular Biology

Multi-Compartment, Early Disruption of cGMP and cAMP Signalling in Cardiac Myocytes from the mdx Model of Duchenne Muscular Dystrophy

Marcella Brescia, Ying-Chi Chao, Andreas Koschinski, Jakub Tomek, Manuela Zaccolo

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Biochemistry & Molecular Biology

Precise and broad scope genome editing based on high-specificity Cas9 nickases

Qian Wang, Jin Liu, Josephine M. Janssen, Marie Le Bouteiller, Richard L. Frock, Manuel A. F. Goncalves

Summary: The study demonstrates that high-specificity Cas9 nucleases can be converted into nicking Cas9(D10A) variants with superior precision compared to the commonly used Cas9(D10A)nickase. Dual nicking RGNs based on these Cas9(D10A) variants can achieve gene knockouts and knock-ins at frequencies similar to or higher than conventional methods. Additionally, the high-specificity dual nicking RGNs are able to distinguish highly similar sequences and preserve genomic integrity.

NUCLEIC ACIDS RESEARCH (2021)

Article Cell Biology

TGF-β-Induced Endothelial to Mesenchymal Transition Is Determined by a Balance Between SNAIL and ID Factors

Jin Ma, Gerard van der Zon, Manuel A. F. V. Goncalves, Maarten van Dinther, Midory Thorikay, Gonzalo Sanchez-Duffhues, Peter ten Dijke

Summary: This study demonstrates that TGF-beta 2 is crucial for triggering EndMT by upregulating SNAIL, while SLUG plays a lesser role. Additionally, ID proteins are essential for maintaining endothelial traits and repressing the function of SNAIL and SLUG during the EndMT process. This suggests that a balance between SNAIL/SLUG and ID proteins determines the control over endothelial vs. mesenchymal cell states.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Broadening the reach and investigating the potential of prime editors through fully viral gene-deleted adenoviral vector delivery

Qian Wang, Jin Liu, Josephine M. Janssen, Francesca Tasca, Hailiang Mei, Manuel A. F. Goncalves

Summary: Packaging prime editing constructs in adenoviral capsids overcomes the difficulty in delivering large prime editing complexes into cells, resulting in robust genome editing with high efficiencies in human cells. The correlation between prime editing activity and cellular replication was found, and the proportion between accurate prime editing events and unwanted byproducts can be influenced by the target-cell context.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

Large-scale genome editing based on high-capacity adenovectors and CRISPR-Cas9 nucleases rescues full-length dystrophin synthesis in DMD muscle cells

Francesca Tasca, Marcella Brescia, Qian Wang, Jin Liu, Josephine M. Janssen, Karoly Szuhai, Manuel A. F. Goncalves

Summary: This study investigates the use of viral gene-deleted adenovector particles (AdVPs) as sources of CRISPR-Cas9 nucleases and donor DNA constructs for targeted chromosomal insertion in human cells. The researchers found that donors prone to homology-mediated end joining (HMEJ) yielded higher genome editing frequencies in muscle progenitor cells, while in induced pluripotent stem cells (iPSCs), both homologous recombination (HR) and HMEJ substrates showed similar editing levels. Furthermore, p53 inhibition increased HMEJ-based genome editing in iPSCs. Overall, AdVPs provide a robust platform for large genomic edits in human cells.

NUCLEIC ACIDS RESEARCH (2022)

Article Biochemistry & Molecular Biology

Precise homology-directed installation of large genomic edits in human cells with cleaving and nicking high-specificity Cas9 variants

Qian Wang, Jin Liu, Josephine M. Janssen, Manuel A. F. Goncalves

Summary: Homology-directed recombination (HDR) allows for precise genomic edits in mammalian cells, but programmable nucleases can also cause unintended modifications. In trans paired nicking (ITPN) using CRISPR-Cas9 nickases enables seamless genome editing. This study identified high-specificity CRISPR-Cas9 nucleases for precise genome editing and demonstrated the compatibility of ITPN with these nickases, leading to editing of essential and recurrent sequences without activating negative DNA damage responses in human iPSCs.

NUCLEIC ACIDS RESEARCH (2023)

Editorial Material Medicine, Research & Experimental

AAV-vectored base editor trans-splicing delivers dystrophin repair

Zhen Li, Manuel A. F. V. Goncalves

MOLECULAR THERAPY-NUCLEIC ACIDS (2023)

Article Medicine, Research & Experimental

High-capacity adenovector delivery of forced CRISPR-Cas9 heterodimers fosters precise chromosomal deletions in human cells

Francesca Tasca, Marcella Brescia, Jin Liu, Josephine M. Janssen, Kamel Mamchaoui, Manuel A. F. V. Goncalves

Summary: Genome editing based on dual CRISPR-Cas9 complexes allows for the removal of specific genomic sequences in living cells, but delivering the required reagents in a synchronous and stoichiometric manner remains challenging. The delivery of forced Cas9 heterodimers or forced CRISPR-Cas9 heterodimers using high-capacity adenovector particles (AdVPs) promotes precise multiplexing genome editing and achieves superior efficiency and accuracy compared to separate delivery of components. The integrated delivery of forced CRISPR-Cas9 heterodimers engages target sequences in a more coordinated fashion, resulting in successful gene editing outcomes.

MOLECULAR THERAPY-NUCLEIC ACIDS (2023)

Article Biochemical Research Methods

Efficient and scalable generation of primordial germ cells in 2D culture using basement membrane extract overlay

Arend W. Overeem, Yolanda W. Chang, Ioannis Moustakas, Celine M. Roelse, Sanne Hillenius, Talia Van Der Helm, Valerie F. Van Der Schrier, Manuel A. F. V. Goncalves, Hailiang Mei, Christian Freund, Susana M. Chuva de Sousa Lopes

Summary: Current methods for generating human primordial germ cell-like cells (hPGCLCs) from human pluripotent stem cells (hPSCs) are inefficient, making it challenging to produce enough hPGCLCs for in vitro gametogenesis optimization. In this study, a differentiation method using diluted basement membrane extract (BMEx) and low BMP4 concentration was developed, which efficiently induced hPGCLC differentiation in scalable 2D cell culture. The overlay of BMEx enhanced BMP/SMAD signaling, induced lumenogenesis, and increased the expression of key hPGCLC-progenitor markers. These findings highlight the significance of BMEx in hPGCLC differentiation and its potential for studying PGC and amnion formation, as well as investigating further steps towards achieving in vitro gametogenesis.

CELL REPORTS METHODS (2023)

No Data Available