Deep-sea corals provide new insight into the ecology, evolution, and the role of plastids in widespread apicomplexan symbionts of anthozoans

Genomic Variants Among Threatened Acropora Corals

(2019) Sheila A. Kitchen et al.   G3-Genes Genomes Genetics

A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes

(2019) Waldan K. Kwong et al.   NATURE

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

(2018) Ehsan Kayal et al.   BMC EVOLUTIONARY BIOLOGY

Global diversity and distribution of close relatives of apicomplexan parasites

(2018) Varsha Mathur et al.   ENVIRONMENTAL MICROBIOLOGY

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Meridional overturning circulation conveys fast acidification to the deep Atlantic Ocean

(2018) Fiz F. Perez et al.   NATURE

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

(2018) Phillipe M. Rosado et al.   ISME Journal

New Species of Closely Related Endosymbiotic Dinoflagellates in the Greater Caribbean have Niches Corresponding to Host Coral Phylogeny

(2018) Allison M. Lewis et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Quality filtering of Illumina index reads mitigates sample cross-talk

(2016) Erik Scott Wright et al.   BMC GENOMICS

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

The complete mitochondrial genomes of five Eimeria species infecting domestic rabbits

(2015) Guo-Hua Liu et al.   EXPERIMENTAL PARASITOLOGY

Home Bodies and Wanderers: Sympatric Lineages of the Deep-Sea Black Coral Leiopathes glaberrima

(2015) Dannise V. Ruiz-Ramos et al.   PLoS One

Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives

(2015) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strategies for Achieving High Sequencing Accuracy for Low Diversity Samples and Avoiding Sample Bleeding Using Illumina Platform

(2015) Abhishek Mitra et al.   PLoS One

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

(2015) Felipe Zapata et al.   PLoS One

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial metabolism of sexual and asexual blood stages of the malaria parasite Plasmodium falciparum

(2013) James I MacRae et al.   BMC BIOLOGY

Ubiquitous associations and a peak fall prevalence between apicomplexan symbionts and reef corals in Florida and the Bahamas

(2013) N. L. Kirk et al.   CORAL REEFS

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching

(2013) Rebecca L. Vega Thurber et al.   GLOBAL CHANGE BIOLOGY

The coral assemblages of an off-shore deep Mediterranean rocky bank (NW Sicily, Italy)

(2013) Marzia Bo et al.   Marine Ecology-An Evolutionary Perspective

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

(2013) Gizele D. Garcia et al.   MICROBIAL ECOLOGY

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides

(2013) Mauricio Rodriguez-Lanetty et al.   MOLECULAR ECOLOGY

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia

(2013) Jan Šlapeta et al.   PLoS One

Tracking Transmission of Apicomplexan Symbionts in Diverse Caribbean Corals

(2013) Nathan L. Kirk et al.   PLoS One

Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs

(2012) Jan Janouškovec et al.   CURRENT BIOLOGY

Environmental distribution of coral-associated relatives of apicomplexan parasites

(2012) Jan Janouškovec et al.   ISME Journal

Global habitat suitability of cold-water octocorals

(2012) Chris Yesson et al.   JOURNAL OF BIOGEOGRAPHY

Impact of the Deepwater Horizon oil spill on a deep-water coral community in the Gulf of Mexico

(2012) H. K. White et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromera velia is Endosymbiotic in Larvae of the Reef Corals Acropora digitifera and A. tenuis

(2012) Vivian R. Cumbo et al.   PROTIST

Biological and chemical characteristics of the coral gastric cavity

(2011) S. Agostini et al.   CORAL REEFS

Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef

(2011) Miroslav Oborník et al.   PROTIST

Annual Burden of Ocular Toxoplasmosis in the United States

(2010) Jeffrey L. Jones et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Physical controls on deep water coral communities on the George V Land slope, East Antarctica

(2010) Alexandra L. Post et al.   ANTARCTIC SCIENCE

X-ray crystal structure of the light-independent protochlorophyllide reductase

(2010) Norifumi Muraki et al.   NATURE

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Divergence of the Mitochondrial Genome Structure in the Apicomplexan Parasites, Babesia and Theileria

(2009) K. Hikosaka et al.   MOLECULAR BIOLOGY AND EVOLUTION

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE