Haplotype-Based Genome-Wide Association Study and Identification of Candidate Genes Associated with Carcass Traits in Hanwoo Cattle

A Gene-Set Enrichment and Protein–Protein Interaction Network-Based GWAS with Regulatory SNPs Identifies Candidate Genes and Pathways Associated with Carcass Traits in Hanwoo Cattle

(2020) Krishnamoorthy Srikanth et al.   Genes

Genomic structure of a crossbred Landrace pig population

(2019) Letícia Borges Joaquim et al.   PLoS One

Genome-Wide Association Study of Meat Quality Traits in Hanwoo Beef Cattle Using Imputed Whole-Genome Sequence Data

(2019) Mohammed Bedhane et al.   Frontiers in Genetics

Genome–wide association study of carcass weight in commercial Hanwoo cattle

(2018) Zewdu Edea et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Haplotype-based genome-wide association study identifies loci and candidate genes for milk yield in Holsteins

(2018) Zhenliang Chen et al.   PLoS One

Genome-wide association study using haplotype alleles for the evaluation of reproductive traits in Nelore cattle

(2018) André Vieira do Nascimento et al.   PLoS One

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Pathway-based genome-wide association analysis of milk coagulation properties, curd firmness, cheese yield, and curd nutrient recovery in dairy cattle

(2017) C. Dadousis et al.   JOURNAL OF DAIRY SCIENCE

PLCB4 copy gain and PLCß4 overexpression in primary gastrointestinal stromal tumors: Integrative characterization of a lipid-catabolizing enzyme associated with worse disease-free survival

(2017) Chien-Feng Li et al.   Oncotarget

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle

(2017) Raluca G. Mateescu et al.   Frontiers in Genetics

A Genome-Wide Association Study for Agronomic Traits in Soybean Using SNP Markers and SNP-Based Haplotype Analysis

(2017) Rodrigo Iván Contreras-Soto et al.   PLoS One

Branched Fatty Acid Esters of Hydroxy Fatty Acids Are Preferred Substrates of the MODY8 Protein Carboxyl Ester Lipase

(2016) Matthew J. Kolar et al.   BIOCHEMISTRY

SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

(2016) Shuji Sato et al.   BMC GENETICS

Pancreatic Beta Cell G-Protein Coupled Receptors and Second Messenger Interactions: A Systems Biology Computational Analysis

(2016) Leonid E. Fridlyand et al.   PLoS One

Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population

(2015) Beatriz CD Cuyabano et al.   BMC GENOMICS

RB1 Methylation by SMYD2 Enhances Cell Cycle Progression through an Increase of RB1 Phosphorylation

(2015) Hyun-Soo Cho et al.   NEOPLASIA

A Whole Genome Association Study on Meat Palatability in Hanwoo

(2014) K.-E. Hyeonga et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Genome-wide Association Study for Warner-Bratzler Shear Force and Sensory Traits in Hanwoo (Korean Cattle)

(2014) C. G. Dang et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

The application of genome-wide SNP genotyping methods in studies on livestock genomes

(2014) Artur Gurgul et al.   JOURNAL OF APPLIED GENETICS

Exposure of Phosphatidylserine by Xk-related Protein Family Members during Apoptosis

(2014) Jun Suzuki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide association study identifies three loci for intramuscular fat in Hanwoo (Korean cattle)

(2014) S.H. Lee et al.   Livestock Science

Genome-Wide Association Studies Using Haplotypes and Individual SNPs in Simmental Cattle

(2014) Yang Wu et al.   PLoS One

Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle

(2014) Heather J. Huson et al.   Frontiers in Genetics

Study of whole genome linkage disequilibrium in Nellore cattle

(2013) Rafael Espigolan et al.   BMC GENOMICS

Genome-Wide Association Study Identifies Major Loci for Carcass Weight on BTA14 in Hanwoo (Korean Cattle)

(2013) Seung Hwan Lee et al.   PLoS One

Genome wide QTL mapping to identify candidate genes for carcass traits in Hanwoo (Korean Cattle)

(2012) Seung Hwan Lee et al.   Genes & Genomics

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Improved whole-chromosome phasing for disease and population genetic studies

(2012) Olivier Delaneau et al.   NATURE METHODS

Proteome differences associated with fat accumulation in bovine subcutaneous adipose tissues

(2012) Yong Zhao et al.   Proteome Science

Guidelines for Genome-Wide Association Studies

(2012) Gregory S. Barsh et al.   PLoS Genetics

Progress of genome wide association study in domestic animals

(2012) Hui Zhang et al.   Journal of Animal Science and Biotechnology

A region on BTA14 that includes the positional candidate genes LYPLA1, XKR4 and TMEM68 is associated with feed intake and growth phenotypes in cattle1

(2011) A. K. Lindholm-Perry et al.   ANIMAL GENETICS

Genetic analysis of complex traits in the emerging Collaborative Cross

(2011) David L. Aylor et al.   GENOME RESEARCH

Haplotype Analysis Improved Evidence for Candidate Genes for Intramuscular Fat Percentage from a Genome Wide Association Study of Cattle

(2011) William Barendse   PLoS One

Ensembl variation resources

(2010) Yuan Chen et al.   BMC GENOMICS

Genome-Wide Association Study Identifies Two Major Loci Affecting Calving Ease and Growth-Related Traits in Cattle

(2010) H. Pausch et al.   GENETICS

High-resolution haplotype block structure in the cattle genome

(2009) Rafael Villa-Angulo et al.   BMC GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Application of Homozygosity Haplotype Analysis to Genetic Mapping with High-Density SNP Genotype Data

(2009) Haiyan Jiang et al.   PLoS One

Accuracy of Genomic Selection Using Different Methods to Define Haplotypes

(2008) M. P. L. Calus et al.   GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH