A basic dd RAD seq two‐enzyme protocol performs well with herbarium and silica‐dried tissues across four genera

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

(2019) Grace E. Brewer et al.   Frontiers in Plant Science

Practical considerations for plant phylogenomics

(2018) Michael R. McKain et al.   Applications in Plant Sciences

Herbarium data: Global biodiversity and societal botanical needs for novel research

(2018) Shelley A. James et al.   Applications in Plant Sciences

Species Tree Estimation using ddRADseq Data from Historical Specimens Confirms the Monophyly of Highly Disjunct Species of Chloropyron (Orobanchaceae)

(2018) Ian S. Gilman et al.   SYSTEMATIC BOTANY

Utilizing RADseq data for phylogenetic analysis of challenging taxonomic groups: A case study in Carex sect. Racemosae

(2016) R. Massatti et al.   AMERICAN JOURNAL OF BOTANY

Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon

(2016) Carolyn A. Wessinger et al.   AMERICAN JOURNAL OF BOTANY

Reversible polymorphism-aware phylogenetic models and their application to tree inference

(2016) Dominik Schrempf et al.   JOURNAL OF THEORETICAL BIOLOGY

Retrieval of hundreds of nuclear loci from herbarium specimens

(2016) Michelle L. Hart et al.   TAXON

Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens

(2016) Clemens L. Weiß et al.   Royal Society Open Science

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

(2015) Carly F. Graham et al.   Molecular Ecology Resources

Next-Generation Sampling: Pairing Genomics with Herbarium Specimens Provides Species-Level Signal inSolidago(Asteraceae)

(2015) James B. Beck et al.   Applications in Plant Sciences

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens

(2012) Tiina Särkinen et al.   PLoS One

DOES HYBRIDIZATION DRIVE THE TRANSITION TO ASEXUALITY IN DIPLOID BOECHERA?

(2011) James B. Beck et al.   EVOLUTION

DNA Damage in Plant Herbarium Tissue

(2011) Martijn Staats et al.   PLoS One

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Molecular phylogeny and systematics of the genus Draba (Brassicaceae) and identification of its most closely related genera

(2010) Ingrid Jordon-Thaden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION