Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection

Profile of the tprK gene in primary syphilis patients based on next-generation sequencing

(2019) Dan Liu et al.   PLoS Neglected Tropical Diseases

Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages

(2019) Mathew A. Beale et al.   Nature Communications

Identification of positively selected genes in human pathogenic treponemes: Syphilis-, yaws-, and bejel-causing strains differ in sets of genes showing adaptive evolution

(2019) Denisa Maděránková et al.   PLoS Neglected Tropical Diseases

Insights into the genetic variation profile of tprK in Treponema pallidum during the development of natural human syphilis infection

(2019) Dan Liu et al.   PLoS Neglected Tropical Diseases

Directly Sequenced Genomes of Contemporary Strains of Syphilis Reveal Recombination-Driven Diversity in Genes Encoding Predicted Surface-Exposed Antigens

(2019) Linda Grillová et al.   Frontiers in Microbiology

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

Long-read amplicon denoising

(2019) Venkatesh Kumar et al.   NUCLEIC ACIDS RESEARCH

Long-Term In Vitro Culture of the Syphilis Spirochete Treponema pallidum subsp. pallidum

(2018) Diane G. Edmondson et al.   mBio

Sequence Variation of Rare Outer Membrane Protein β-Barrel Domains in Clinical Strains Provides Insights into the Evolution of Treponema pallidum subsp. pallidum , the Syphilis Spirochete

(2018) Sanjiv Kumar et al.   mBio

Rates and Correlates of Syphilis Reinfection in Men Who Have Sex with Men

(2017) Jennifer Jain et al.   LGBT Health

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Treponema pallidum, the syphilis spirochete: making a living as a stealth pathogen

(2016) Justin D. Radolf et al.   NATURE REVIEWS MICROBIOLOGY

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation

(2016) Miguel Pinto et al.   Nature Microbiology

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

(2016) Natasha Arora et al.   Nature Microbiology

A Homology Model Reveals Novel Structural Features and an Immunodominant Surface Loop/Opsonic Target in the Treponema pallidum BamA Ortholog TP_0326

(2015) Amit Luthra et al.   JOURNAL OF BACTERIOLOGY

Treponema pallidum subsp. pallidum TP0136 Protein Is Heterogeneous among Isolates and Binds Cellular and Plasma Fibronectin via its NH2-Terminal End

(2015) Wujian Ke et al.   PLoS Neglected Tropical Diseases

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Current status of syphilis vaccine development: Need, challenges, prospects

(2013) Caroline E. Cameron et al.   VACCINE

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Comparative Investigation of the Genomic Regions Involved in Antigenic Variation of the TprK Antigen among Treponemal Species, Subspecies, and Strains

(2012) L. Giacani et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Repeat Syphilis Among Men Who Have Sex With Men in California, 2002–2006: Implications for Syphilis Elimination Efforts

(2011) Stephanie E. Cohen et al.   AMERICAN JOURNAL OF PUBLIC HEALTH

TP0326, a Treponema pallidum β-barrel assembly machinery A (BamA) orthologue and rare outer membrane protein

(2011) Daniel C. Desrosiers et al.   MOLECULAR MICROBIOLOGY

Surface Immunolabeling and Consensus Computational Framework To Identify Candidate Rare Outer Membrane Proteins of Treponema pallidum

(2010) D. L. Cox et al.   INFECTION AND IMMUNITY

Antigenic Variation in Treponema pallidum: TprK Sequence Diversity Accumulates in Response to Immune Pressure during Experimental Syphilis

(2010) L. Giacani et al.   JOURNAL OF IMMUNOLOGY

Enhanced Molecular Typing ofTreponema pallidum: Geographical Distribution of Strain Types and Association with Neurosyphilis

(2010) Christina M. Marra et al.   JOURNAL OF INFECTIOUS DISEASES

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Novel Treponema pallidum Antigen, TP0136, Is an Outer Membrane Protein That Binds Human Fibronectin

(2008) M. B. Brinkman et al.   INFECTION AND IMMUNITY