Additive and mostly adaptive plastic responses of gene expression to multiple stress in Tribolium castaneum

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(2018) N.E. Gruntenko et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats

(2017) Taylor C. Gibbons et al.   MOLECULAR ECOLOGY

Reproduction–Immunity Trade-Offs in Insects

(2016) Robin A. Schwenke et al.   Annual Review of Entomology

Multiple Stressors in a Changing World: The Need for an Improved Perspective on Physiological Responses to the Dynamic Marine Environment

(2016) Alex R. Gunderson et al.   Annual Review of Marine Science

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

(2016) Masaomi Hatakeyama et al.   BMC BIOINFORMATICS

Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness

(2016) Leeat Keren et al.   CELL

The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes

(2016) R. J. Scott McCairns et al.   Evolutionary Applications

Adaptation to climate change: trade-offs among responses to multiple stressors in an intertidal crustacean

(2016) Morgan W. Kelly et al.   Evolutionary Applications

Can a Network Approach Resolve How Adaptive vs Nonadaptive Plasticity Impacts Evolutionary Trajectories?

(2016) Eva K. Fischer et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

RNA-seq reveals a diminished acclimation response to the combined effects of ocean acidification and elevated seawater temperature in Pagothenia borchgrevinki

(2016) Troy J. Huth et al.   Marine Genomics

How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations

(2016) Ralf F. Schneider et al.   MOLECULAR ECOLOGY

Experimental Evolution of Gene Expression and Plasticity in Alternative Selective Regimes

(2016) Yuheng Huang et al.   PLoS Genetics

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(2016) Matthew R.J. Morris et al.   Current Zoology

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(2016) Matthias Liess et al.   Scientific Reports

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(2015) Ian M. Ehrenreich et al.   ANNALS OF BOTANY

Insect Heat Shock Proteins During Stress and Diapause

(2015) Allison M. King et al.   Annual Review of Entomology

Considerations for the use of transcriptomics in identifying the 'genes that matter' for environmental adaptation

(2015) T. G. Evans   JOURNAL OF EXPERIMENTAL BIOLOGY

Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling (Thymallus thymallus) Subpopulations Adapted to Different Thermal Environments

(2015) Hannu Mäkinen et al.   JOURNAL OF HEREDITY

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Phenotypic plasticity and divergence in gene expression

(2015) Timothy M. Healy et al.   MOLECULAR ECOLOGY

Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes

(2015) A. Moya et al.   MOLECULAR ECOLOGY

Phenotypic plasticity in gene expression contributes to divergence of locally adapted populations ofFundulus heteroclitus

(2015) David I. Dayan et al.   MOLECULAR ECOLOGY

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

Malpighian tubule development in the red flour beetle (Tribolium castaneum)

(2014) Benedict King et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Is warmer better? Decreased oxidative damage in notothenioid fish after long-term acclimation to multiple stressors

(2014) L. A. Enzor et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability

(2014) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Cryptic genetic variation: evolution's hidden substrate

(2014) Annalise B. Paaby et al.   NATURE REVIEWS GENETICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

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(2013) Y. Liao et al.   BIOINFORMATICS

ESTIMATING UNCERTAINTY IN MULTIVARIATE RESPONSES TO SELECTION

(2013) John R. Stinchcombe et al.   EVOLUTION

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

Energy-Limited Tolerance to Stress as a Conceptual Framework to Integrate the Effects of Multiple Stressors

(2013) I. M. Sokolova   INTEGRATIVE AND COMPARATIVE BIOLOGY

Multistressor Impacts of Warming and Acidification of the Ocean on Marine Invertebrates' Life Histories

(2013) M. Byrne et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Transcriptome Responses to Combinations of Stresses in Arabidopsis

(2013) S. Rasmussen et al.   PLANT PHYSIOLOGY

The Red Flour Beetle as a Model for Bacterial Oral Infections

(2013) Barbara Milutinović et al.   PLoS One

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(2012) Alexander Dobin et al.   BIOINFORMATICS

Multigenerational analysis of temperature and salinity variability affects on metabolic rate, generation time, and acute thermal and salinity tolerance in Daphnia pulex

(2012) Xi Chen et al.   JOURNAL OF THERMAL BIOLOGY

The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemoneAnemonia viridis

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Evolution of gene expression and expression plasticity in long-term experimental populations ofDrosophila melanogastermaintained under constant and variable ethanol stress

(2012) LEV Y. YAMPOLSKY et al.   MOLECULAR ECOLOGY

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Transcriptomic Characterization of Temperature Stress Responses in Larval Zebrafish

(2012) Yong Long et al.   PLoS One

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(2011) Wei Zheng et al.   Annual Review of Genomics and Human Genetics

Molecular analysis of nutritional and hormonal regulation of female reproduction in the red flour beetle, Tribolium castaneum

(2011) R. Parthasarathy et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

The role of gene expression in ecological speciation

(2010) Scott A. Pavey et al.   Annals of the New York Academy of Sciences

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(2010) Di Wu et al.   BIOINFORMATICS

Ecdysteroid regulation of ovarian growth and oocyte maturation in the red flour beetle, Tribolium castaneum

(2010) R. Parthasarathy et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Juvenile hormone regulation of vitellogenin synthesis in the red flour beetle, Tribolium castaneum

(2010) R. Parthasarathy et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The danger of applying the breeder's equation in observational studies of natural populations

(2010) M. B. MORRISSEY et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The function of nuclear receptors in regulation of female reproduction and embryogenesis in the red flour beetle, Tribolium castaneum

(2010) Jingjing Xu et al.   JOURNAL OF INSECT PHYSIOLOGY

Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

(2010) M. T. Levine et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators

(2010) A. G. Scoville et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory

(2010) Luis-Miguel Chevin et al.   PLOS BIOLOGY

The Covariance between Genetic and Environmental Influences across Ecological Gradients

(2009) David O. Conover et al.   Annals of the New York Academy of Sciences

Abundant Genetic Variation + Strong Selection = Multivariate Genetic Constraints: A Geometric View of Adaptation

(2009) Bruce Walsh et al.   Annual Review of Ecology Evolution and Systematics

Inherited Variation in Gene Expression

(2009) Daniel A. Skelly et al.   Annual Review of Genomics and Human Genetics

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Animal performance and stress: responses and tolerance limits at different levels of biological organisation

(2009) Karin S. Kassahn et al.   BIOLOGICAL REVIEWS

ADAPTIVE DIVERGENCE BETWEEN FRESHWATER AND MARINE STICKLEBACKS: INSIGHTS INTO THE ROLE OF PHENOTYPIC PLASTICITY FROM AN INTEGRATED ANALYSIS OF CANDIDATE GENE EXPRESSION

(2009) R. J. Scott McCairns et al.   EVOLUTION

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Selection for cold resistance alters gene transcript levels in Drosophila melanogaster

(2009) M. Telonis-Scott et al.   JOURNAL OF INSECT PHYSIOLOGY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Interactive and cumulative effects of multiple human stressors in marine systems

(2008) Caitlin Mullan Crain et al.   ECOLOGY LETTERS

Vasopressin-like peptide and its receptor function in an indirect diuretic signaling pathway in the red flour beetle

(2008) Michael J. Aikins et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

A proteomic analysis of the aphid Macrosiphum euphorbiae under heat and radiation stress

(2008) Thi Thuy An Nguyen et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Phenotypic plasticity and experimental evolution

(2008) T. Garland et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Insect vitellogenin/lipophorin receptors: Molecular structures, role in oogenesis, and regulatory mechanisms

(2008) Muhammad Tufail et al.   JOURNAL OF INSECT PHYSIOLOGY

The environmental contribution to gene expression profiles

(2008) Greg Gibson   NATURE REVIEWS GENETICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Postgenomics of Tribolium: Targeting the endocrine regulation of diuresis

(2008) Yoonseong PARK et al.   ENTOMOLOGICAL RESEARCH

Gene expression variation in African and European populations of Drosophila melanogaster

(2008) Stephan Hutter et al.   GENOME BIOLOGY

A genome-wide inventory of neurohormone GPCRs in the red flour beetle Tribolium castaneum

(2007) Frank Hauser et al.   FRONTIERS IN NEUROENDOCRINOLOGY

Analysis of transcriptome data in the red flour beetle, Tribolium castaneum

(2007) Yoonseong Park et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY