Perspectives on the use of super-enhancers as a defining feature of cell/tissue-identity genes
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Perspectives on the use of super-enhancers as a defining feature of cell/tissue-identity genes
Authors
Keywords
-
Journal
Epigenomics
Volume -, Issue -, Pages -
Publisher
Future Medicine Ltd
Online
2020-05-13
DOI
10.2217/epi-2019-0290
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- LRH1-driven transcription factor circuitry for hepatocyte identity: Super-enhancer cistromic analysis
- (2019) Min Sung Joo et al. EBioMedicine
- A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops
- (2019) Jayoung Ryu et al. BMC BIOINFORMATICS
- SEanalysis: a web tool for super-enhancer associated regulatory analysis
- (2019) Feng-Cui Qian et al. NUCLEIC ACIDS RESEARCH
- Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
- (2019) Jeffrey M Alexander et al. eLife
- Inflated performance measures in enhancer–promoter interaction-prediction methods
- (2019) Fan Cao et al. NATURE GENETICS
- The ENCODE Blacklist: Identification of Problematic Regions of the Genome
- (2019) Haley M. Amemiya et al. Scientific Reports
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- Super-enhancers in transcriptional regulation and genome organization
- (2019) Xi Wang et al. NUCLEIC ACIDS RESEARCH
- SEA version 3.0: a comprehensive extension and update of the Super-Enhancer archive
- (2019) Chuangeng Chen et al. NUCLEIC ACIDS RESEARCH
- Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells
- (2019) Bum-Kyu Lee et al. Nature Communications
- DEEPSEN: a convolutional neural network based method for super-enhancer prediction
- (2019) Hongda Bu et al. BMC BIOINFORMATICS
- Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation
- (2019) Hao-Chun Chang et al. BMC GENOMICS
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
- (2018) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription
- (2018) Yong Hoon Kim et al. SCIENCE
- Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
- (2018) Clara Lopes Novo et al. Cell Reports
- Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia
- (2018) Christopher J. Ott et al. CANCER CELL
- The logic of transcriptional regulator recruitment architecture at cis -regulatory modules controlling liver functions
- (2017) Julie Dubois-Chevalier et al. GENOME RESEARCH
- SMiLE-seq identifies binding motifs of single and dimeric transcription factors
- (2017) Alina Isakova et al. NATURE METHODS
- dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals
- (2017) Moli Huang et al. NUCLEIC ACIDS RESEARCH
- Gene regulatory networks in differentiation and direct reprogramming of hepatic cells
- (2017) Claude Gérard et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- A mouse tissue transcription factor atlas
- (2017) Quan Zhou et al. Nature Communications
- Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
- (2017) Asa Thibodeau et al. Scientific Reports
- Simultaneous Transcriptional and Epigenomic Profiling from Specific Cell Types within Heterogeneous Tissues In Vivo
- (2017) Hyun Cheol Roh et al. Cell Reports
- Integrated genome browser: visual analytics platform for genomics
- (2016) Nowlan H. Freese et al. BIOINFORMATICS
- Models of human core transcriptional regulatory circuitries
- (2016) Violaine Saint-André et al. GENOME RESEARCH
- The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation
- (2016) Makiko Iwafuchi-Doi et al. MOLECULAR CELL
- DNA-dependent formation of transcription factor pairs alters their binding specificity
- (2015) Arttu Jolma et al. NATURE
- Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
- (2015) Kaifu Chen et al. NATURE GENETICS
- What are super-enhancers?
- (2015) Sebastian Pott et al. NATURE GENETICS
- dbSUPER: a database of super-enhancers in mouse and human genome
- (2015) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity
- (2015) Ana C. D’Alessio et al. Stem Cell Reports
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
- (2014) Hong-Mei Zhang et al. NUCLEIC ACIDS RESEARCH
- A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation
- (2014) Julie Dubois-Chevalier et al. NUCLEIC ACIDS RESEARCH
- Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
- (2014) J. Vierstra et al. SCIENCE
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
- (2013) Casey A. Gifford et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- The human constitutive androstane receptor promotes the differentiation and maturation of hepatic-like cells
- (2013) Fengming Chen et al. DEVELOPMENTAL BIOLOGY
- Peroxisome Proliferator-activated Receptor γ Regulates Genes Involved in Insulin/Insulin-like Growth Factor Signaling and Lipid Metabolism during Adipogenesis through Functionally Distinct Enhancer Classes
- (2013) Frédérik Oger et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- Spark: A navigational paradigm for genomic data exploration
- (2012) C. B. Nielsen et al. GENOME RESEARCH
- Predicting cell-type-specific gene expression from regions of open chromatin
- (2012) A. Natarajan et al. GENOME RESEARCH
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- Role of nuclear receptor SHP in metabolism and cancer
- (2010) Yuxia Zhang et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The ploidy conveyor of mature hepatocytes as a source of genetic variation
- (2010) Andrew W. Duncan et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems
- (2010) V. Kaimal et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now