Perspectives on the use of super-enhancers as a defining feature of cell/tissue-identity genes
出版年份 2020 全文链接
标题
Perspectives on the use of super-enhancers as a defining feature of cell/tissue-identity genes
作者
关键词
-
出版物
Epigenomics
Volume -, Issue -, Pages -
出版商
Future Medicine Ltd
发表日期
2020-05-13
DOI
10.2217/epi-2019-0290
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- LRH1-driven transcription factor circuitry for hepatocyte identity: Super-enhancer cistromic analysis
- (2019) Min Sung Joo et al. EBioMedicine
- A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops
- (2019) Jayoung Ryu et al. BMC BIOINFORMATICS
- SEanalysis: a web tool for super-enhancer associated regulatory analysis
- (2019) Feng-Cui Qian et al. NUCLEIC ACIDS RESEARCH
- Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
- (2019) Jeffrey M Alexander et al. eLife
- Inflated performance measures in enhancer–promoter interaction-prediction methods
- (2019) Fan Cao et al. NATURE GENETICS
- The ENCODE Blacklist: Identification of Problematic Regions of the Genome
- (2019) Haley M. Amemiya et al. Scientific Reports
- Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
- (2019) Nezha S. Benabdallah et al. MOLECULAR CELL
- Super-enhancers in transcriptional regulation and genome organization
- (2019) Xi Wang et al. NUCLEIC ACIDS RESEARCH
- SEA version 3.0: a comprehensive extension and update of the Super-Enhancer archive
- (2019) Chuangeng Chen et al. NUCLEIC ACIDS RESEARCH
- Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells
- (2019) Bum-Kyu Lee et al. Nature Communications
- DEEPSEN: a convolutional neural network based method for super-enhancer prediction
- (2019) Hongda Bu et al. BMC BIOINFORMATICS
- Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation
- (2019) Hao-Chun Chang et al. BMC GENOMICS
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
- (2018) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription
- (2018) Yong Hoon Kim et al. SCIENCE
- Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
- (2018) Clara Lopes Novo et al. Cell Reports
- Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia
- (2018) Christopher J. Ott et al. CANCER CELL
- The logic of transcriptional regulator recruitment architecture at cis -regulatory modules controlling liver functions
- (2017) Julie Dubois-Chevalier et al. GENOME RESEARCH
- SMiLE-seq identifies binding motifs of single and dimeric transcription factors
- (2017) Alina Isakova et al. NATURE METHODS
- dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals
- (2017) Moli Huang et al. NUCLEIC ACIDS RESEARCH
- Gene regulatory networks in differentiation and direct reprogramming of hepatic cells
- (2017) Claude Gérard et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- A mouse tissue transcription factor atlas
- (2017) Quan Zhou et al. Nature Communications
- Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
- (2017) Asa Thibodeau et al. Scientific Reports
- Simultaneous Transcriptional and Epigenomic Profiling from Specific Cell Types within Heterogeneous Tissues In Vivo
- (2017) Hyun Cheol Roh et al. Cell Reports
- Integrated genome browser: visual analytics platform for genomics
- (2016) Nowlan H. Freese et al. BIOINFORMATICS
- Models of human core transcriptional regulatory circuitries
- (2016) Violaine Saint-André et al. GENOME RESEARCH
- The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation
- (2016) Makiko Iwafuchi-Doi et al. MOLECULAR CELL
- DNA-dependent formation of transcription factor pairs alters their binding specificity
- (2015) Arttu Jolma et al. NATURE
- Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
- (2015) Kaifu Chen et al. NATURE GENETICS
- What are super-enhancers?
- (2015) Sebastian Pott et al. NATURE GENETICS
- dbSUPER: a database of super-enhancers in mouse and human genome
- (2015) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity
- (2015) Ana C. D’Alessio et al. Stem Cell Reports
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
- (2014) Hong-Mei Zhang et al. NUCLEIC ACIDS RESEARCH
- A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation
- (2014) Julie Dubois-Chevalier et al. NUCLEIC ACIDS RESEARCH
- Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
- (2014) J. Vierstra et al. SCIENCE
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
- (2013) Casey A. Gifford et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- The human constitutive androstane receptor promotes the differentiation and maturation of hepatic-like cells
- (2013) Fengming Chen et al. DEVELOPMENTAL BIOLOGY
- Peroxisome Proliferator-activated Receptor γ Regulates Genes Involved in Insulin/Insulin-like Growth Factor Signaling and Lipid Metabolism during Adipogenesis through Functionally Distinct Enhancer Classes
- (2013) Frédérik Oger et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- Spark: A navigational paradigm for genomic data exploration
- (2012) C. B. Nielsen et al. GENOME RESEARCH
- Predicting cell-type-specific gene expression from regions of open chromatin
- (2012) A. Natarajan et al. GENOME RESEARCH
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- Role of nuclear receptor SHP in metabolism and cancer
- (2010) Yuxia Zhang et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The ploidy conveyor of mature hepatocytes as a source of genetic variation
- (2010) Andrew W. Duncan et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems
- (2010) V. Kaimal et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started