Toxin-Antitoxin Gene Pairs Found in Tn3 Family Transposons Appear To Be an Integral Part of the Transposition Module

A novel plasmid-encoded mcr-4.3 gene in a colistin-resistant Acinetobacter baumannii clinical strain

(2019) Natacha Martins-Sorenson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

FlexiDot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses

(2018) Kathrin M Seibt et al.   BIOINFORMATICS

Database resources of the National Center for Biotechnology Information

(2018) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Transposons and pathogenicity in Xanthomonas: acquisition of murein lytic transglycosylases by TnXax1 enhances Xanthomonas citri subsp. citri 306 virulence and fitness

(2018) Amanda C.P. Oliveira et al.   PeerJ

TADB 2.0: an updated database of bacterial type II toxin–antitoxin loci

(2017) Yingzhou Xie et al.   NUCLEIC ACIDS RESEARCH

Chaperone addiction of toxin–antitoxin systems

(2016) Patricia Bordes et al.   Nature Communications

Type II Toxin-Antitoxin Distribution and Adaptive Aspects on Xanthomonas Genomes: Focus on Xanthomonas citri

(2016) Paula M. M. Martins et al.   Frontiers in Microbiology

Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance

(2015) Wesley Loftie-Eaton et al.   MOLECULAR BIOLOGY AND EVOLUTION

RefSeq microbial genomes database: new representation and annotation strategy

(2015) T. Tatusova et al.   NUCLEIC ACIDS RESEARCH

A TALE of Transposition: Tn 3 -Like Transposons Play a Major Role in the Spread of Pathogenicity Determinants of Xanthomonas citri and Other Xanthomonads

(2015) Rafael Marini Ferreira et al.   mBio

Identification and characterization of a HEPN-MNT family type II toxin-antitoxin inShewanella oneidensis

(2015) Jianyun Yao et al.   Microbial Biotechnology

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Update on RefSeq microbial genomes resources

(2014) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing

(2013) Vivek Anantharaman et al.   Biology Direct

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range

(2013) Neha Jalan et al.   BMC GENOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cointegrate-resolution of toluene-catabolic transposon Tn4651: Determination of crossover site and the segment required for full resolution activity

(2012) Hirokazu Yano et al.   PLASMID

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Toxins-antitoxins: diversity, evolution and function

(2011) Finbarr Hayes et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Multicopy plasmid stability: Revisiting the dimer catastrophe

(2011) C.M. Field et al.   JOURNAL OF THEORETICAL BIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Allostery and Intrinsic Disorder Mediate Transcription Regulation by Conditional Cooperativity

(2010) Abel Garcia-Pino et al.   CELL

Complete Nucleotide Sequence of TOL Plasmid pDK1 Provides Evidence for Evolutionary History of IncP-7 Catabolic Plasmids

(2010) H. Yano et al.   JOURNAL OF BACTERIOLOGY

TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea

(2010) Yucheng Shao et al.   NUCLEIC ACIDS RESEARCH

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS