Phylogenetic clustering and rarity imply risk of local species extinction in prospective deep-sea mining areas of the Clarion–Clipperton Fracture Zone

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

(2019) Diego Darriba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist species

(2018) David Singer et al.   ECOLOGY

Meiofauna matters: The roles of meiofauna in benthic ecosystems

(2018) Michaela Schratzberger et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Regional-scale drivers of marine nematode distribution in Southern Ocean continental shelf sediments

(2018) Freija Hauquier et al.   PROGRESS IN OCEANOGRAPHY

Habitat filtering of bacterioplankton communities above polymetallic nodule fields and sediments in the Clarion-Clipperton zone of the Pacific Ocean

(2018) Markus V. Lindh et al.   Environmental Microbiology Reports

Phylogenetic and functional evidence suggests that deep-ocean ecosystems are highly sensitive to environmental change and direct human disturbance

(2018) Oliver S. Ashford et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nematode communities inhabiting the soft deep-sea sediment in polymetallic nodule fields: do they differ from those in the nodule-free abyssal areas?

(2016) Ravail Singh et al.   Marine Biology Research

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Environmental filtering and neutral processes shape octocoral community assembly in the deep sea

(2016) Andrea M. Quattrini et al.   OECOLOGIA

Threatened by mining, polymetallic nodules are required to preserve abyssal epifauna

(2016) Ann Vanreusel et al.   Scientific Reports

Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific

(2015) Dmitry Miljutin et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Influence of tree shape and evolutionary time-scale on phylogenetic diversity metrics

(2015) Florent Mazel et al.   ECOGRAPHY

On some hypotheses of diversity of animal life at great depths on the sea floor

(2015) Craig R. McClain et al.   Marine Ecology-An Evolutionary Perspective

Nematode community composition and feeding shaped by contrasting productivity regimes in the Southern Ocean

(2015) Lidia Lins et al.   PROGRESS IN OCEANOGRAPHY

Managing mining of the deep seabed

(2015) L. M. Wedding et al.   SCIENCE

Linking operational clustered taxonomic units (OCTUs) from parallel ultra sequencing (PUS) to nematode species

(2015) D. L. Porazinska et al.   ZOOTAXA

Meiofauna increases bacterial denitrification in marine sediments

(2014) S. Bonaglia et al.   Nature Communications

Anthropogenic modification disrupts species co-occurrence in stream invertebrates

(2013) Stefano Larsen et al.   GLOBAL CHANGE BIOLOGY

Rare Species Support Vulnerable Functions in High-Diversity Ecosystems

(2013) David Mouillot et al.   PLOS BIOLOGY

Phylogenetic Analysis Suggests That Habitat Filtering Is Structuring Marine Bacterial Communities Across the Globe

(2012) Mikael Pontarp et al.   MICROBIAL ECOLOGY

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida)

(2011) Holly M Bik et al.   BMC EVOLUTIONARY BIOLOGY

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

The contribution of deep-sea macrohabitat heterogeneity to global nematode diversity

(2010) Ann Vanreusel et al.   Marine Ecology-An Evolutionary Perspective

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Metazoan meiofauna in deep-sea canyons and adjacent open slopes: A large-scale comparison with focus on the rare taxa

(2009) S. Bianchelli et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

The Effect of Primer-Template Mismatches on the Detection and Quantification of Nucleic Acids Using the 5′ Nuclease Assay

(2009) Ralph Stadhouders et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

Deep-sea nematode assemblages of the Clarion-Clipperton Nodule Province (Tropical North-Eastern Pacific)

(2009) Maria A. Miljutina et al.   Marine Biodiversity

Emerging patterns in the comparative analysis of phylogenetic community structure

(2008) S. M. VAMOSI et al.   MOLECULAR ECOLOGY

A common tendency for phylogenetic overdispersion in mammalian assemblages

(2008) N. Cooper et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION

Does phylogenetic relatedness influence the strength of competition among vascular plants?

(2007) James F. Cahill et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS