Mimicry diversification in Papilio dardanus via a genomic inversion in the regulatory region of engrailed – invected

Evolving Inversions

(2019) Rui Faria et al.   TRENDS IN ECOLOGY & EVOLUTION

Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Diverse Adaptations

(2019) Nicholas W VanKuren et al.   MOLECULAR BIOLOGY AND EVOLUTION

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion

(2018) Paul Jay et al.   CURRENT BIOLOGY

UniProt: the universal protein knowledgebase

(2018) The UniProt Consortium   NUCLEIC ACIDS RESEARCH

Parallel evolution of Batesian mimicry supergene in twoPapiliobutterflies,P. polytesandP. memnon

(2018) Takuro Iijima et al.   Science Advances

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles

(2018) Toshiya Ando et al.   Nature Communications

Independent evolution of sexual dimorphism and female-limited mimicry in swallowtail butterflies (Papilio dardanusandPapilio phorcas)

(2017) M. J. T. N. Timmermans et al.   MOLECULAR ECOLOGY

Divergence and Functional Degradation of a Sex Chromosome-like Supergene

(2016) Elaina M. Tuttle et al.   CURRENT BIOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The status of supergenes in the 21st century: recombination suppression in Batesian mimicry and sex chromosomes and other complex adaptations

(2015) Deborah Charlesworth   Evolutionary Applications

A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths

(2015) Shan Quah et al.   MOLECULAR BIOLOGY AND EVOLUTION

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

(2015) Hideki Nishikawa et al.   NATURE GENETICS

A supergene determines highly divergent male reproductive morphs in the ruff

(2015) Clemens Küpper et al.   NATURE GENETICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The evolutionary genetics of highly divergent alleles of the mimicry locus in Papilio dardanus

(2014) Martin J Thompson et al.   BMC EVOLUTIONARY BIOLOGY

Co-regulation of invected and engrailed by a complex array of regulatory sequences in Drosophila

(2014) Yuzhong Cheng et al.   DEVELOPMENTAL BIOLOGY

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Supergenes and their role in evolution

(2014) M J Thompson et al.   HEREDITY

doublesex is a mimicry supergene

(2014) K. Kunte et al.   NATURE

Characterising the Phenotypic Diversity of Papilio dardanus Wing Patterns Using an Extensive Museum Collection

(2014) Martin J. Thompson et al.   PLoS One

Comparative genomics of the mimicry switch in Papilio dardanus

(2014) M. J. T. N. Timmermans et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments

(2013) Daniel Garrigan   Evolutionary Bioinformatics

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Quake: quality-aware detection and correction of sequencing errors

(2012) David R Kelley et al.   GENOME BIOLOGY

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

THE DIVERSITY AND EVOLUTION OF BATESIAN MIMICRY INPAPILIOSWALLOWTAIL BUTTERFLIES

(2009) Krushnamegh Kunte   EVOLUTION

Butterfly speciation and the distribution of gene effect sizes fixed during adaptation

(2008) S W Baxter et al.   HEREDITY

Colour pattern specification in the Mocker swallowtail Papilio dardanus: the transcription factor invected is a candidate for the mimicry locus H

(2008) R. Clark et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES