Assessing the impact of incomplete species sampling on estimates of speciation and extinction rates

FossilSim : An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery

(2019) Joëlle Barido‐Sottani et al.   Methods in Ecology and Evolution

Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework

(2019) Daniele Silvestro et al.   PALEOBIOLOGY

The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes

(2018) Tanja Stadler et al.   JOURNAL OF THEORETICAL BIOLOGY

Detecting diversification rates in relation to preservation and tectonic history from simulated fossil records

(2018) Tara M. Smiley   PALEOBIOLOGY

Closing the gap between palaeontological and neontological speciation and extinction rate estimates

(2018) Daniele Silvestro et al.   Nature Communications

Bias in phylogenetic measurements of extinction and a case study of end-Permian tetrapods

(2017) Laura C. Soul et al.   PALAEONTOLOGY

Five palaeobiological laws needed to understand the evolution of the living biota

(2017) Charles R. Marshall   Nature Ecology & Evolution

Comparing cal3 and other a posteriori time-scaling approaches in a case study with the pterocephaliid trilobites

(2016) David W. Bapst et al.   PALEOBIOLOGY

The non-uniformity of fossil preservation

(2016) Steven M. Holland   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Total-Evidence Dating under the Fossilized Birth–Death Process

(2015) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Accurate and precise estimates of origination and extinction rates

(2014) John Alroy   PALEOBIOLOGY

The fossilized birth-death process for coherent calibration of divergence-time estimates

(2014) T. A. Heath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data

(2014) Daniele Silvestro et al.   SYSTEMATIC BIOLOGY

PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data

(2014) Daniele Silvestro et al.   Methods in Ecology and Evolution

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

(2014) Alexandra Gavryushkina et al.   PLoS Computational Biology

When Can Clades Be Potentially Resolved with Morphology?

(2013) David W. Bapst   PLoS One

Modelling distributions of fossil sampling rates over time, space and taxa: assessment and implications for macroevolutionary studies

(2013) Peter J. Wagner et al.   Methods in Ecology and Evolution

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

(2012) T. Stadler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Hierarchical Bayesian Model for Calibrating Estimates of Species Divergence Times

(2012) Tracy A. Heath   SYSTEMATIC BIOLOGY

The meaning of birth and death (in macroevolutionary birth-death models)

(2011) T. H. G. Ezard et al.   Biology Letters

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

Sampling-through-time in birth–death trees

(2010) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Diversity dynamics: molecular phylogenies need the fossil record

(2010) Tiago B. Quental et al.   TRENDS IN ECOLOGY & EVOLUTION

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

On incomplete sampling under birth–death models and connections to the sampling-based coalescent

(2009) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY

Dynamics of origination and extinction in the marine fossil record

(2008) J. Alroy   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phanerozoic Trends in the Global Diversity of Marine Invertebrates

(2008) J. Alroy et al.   SCIENCE