MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems

Optical Voltage Sensing Using DNA Origami

(2018) Elisa A. Hemmig et al.   NANO LETTERS

Three-dimensional structural dynamics of DNA origami Bennett linkages using individual-particle electron tomography

(2018) Dongsheng Lei et al.   Nature Communications

A synthetic enzyme built from DNA flips 107 lipids per second in biological membranes

(2018) Alexander Ohmann et al.   Nature Communications

Coarse-grained modelling of the structural properties of DNA origami

(2018) Benedict E K Snodin et al.   NUCLEIC ACIDS RESEARCH

Sub-10 nm patterning with DNA nanostructures: a short perspective

(2017) Ke Du et al.   NANOTECHNOLOGY

Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components

(2017) Luvena L. Ong et al.   NATURE

Gigadalton-scale shape-programmable DNA assemblies

(2017) Klaus F. Wagenbauer et al.   NATURE

A coarse-grained model for DNA origami

(2017) Roman V Reshetnikov et al.   NUCLEIC ACIDS RESEARCH

DNA nanotechnology

(2017) Nadrian C. Seeman et al.   Nature Reviews Materials

Direct Simulation of the Self-Assembly of a Small DNA Origami

(2016) Benedict E. K. Snodin et al.   ACS Nano

Large-Conductance Transmembrane Porin Made from DNA Origami

(2016) Kerstin Göpfrich et al.   ACS Nano

Probing Nucleosome Stability with a DNA Origami Nanocaliper

(2016) Jenny V. Le et al.   ACS Nano

Exploring Nucleosome Unwrapping Using DNA Origami

(2016) Jonas J. Funke et al.   NANO LETTERS

Ion Channels Made from a Single Membrane-Spanning DNA Duplex

(2016) Kerstin Göpfrich et al.   NANO LETTERS

Engineering and mapping nanocavity emission via precision placement of DNA origami

(2016) Ashwin Gopinath et al.   NATURE

Directing folding pathways for multi-component DNA origami nanostructures with complex topology

(2016) A E Marras et al.   NEW JOURNAL OF PHYSICS

Molecular mechanics of DNA bricks:in situstructure, mechanical properties and ionic conductivity

(2016) Scott Michael Slone et al.   NEW JOURNAL OF PHYSICS

De novoreconstruction of DNA origami structures through atomistic molecular dynamics simulation

(2016) Christopher Maffeo et al.   NUCLEIC ACIDS RESEARCH

Designer nanoscale DNA assemblies programmed from the top down

(2016) R. Veneziano et al.   SCIENCE

Uncovering the forces between nucleosomes using DNA origami

(2016) J. J. Funke et al.   Science Advances

Ionic Conductivity, Structural Deformation, and Programmable Anisotropy of DNA Origami in Electric Field

(2015) Chen-Yu Li et al.   ACS Nano

Plasmonic Nanopores for Trapping, Controlling Displacement, and Sequencing of DNA

(2015) Maxim Belkin et al.   ACS Nano

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA

(2015) Benedict E. K. Snodin et al.   JOURNAL OF CHEMICAL PHYSICS

Martini Coarse-Grained Force Field: Extension to DNA

(2015) Jaakko J. Uusitalo et al.   Journal of Chemical Theory and Computation

A Robust Highly Aligned DNA Nanowire Array-Enabled Lithography for Graphene Nanoribbon Transistors

(2015) Seok Hee Kang et al.   NANO LETTERS

DNA rendering of polyhedral meshes at the nanoscale

(2015) Erik Benson et al.   NATURE

Programmable motion of DNA origami mechanisms

(2015) Alexander E. Marras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasmonic DNA-Origami Nanoantennas for Surface-Enhanced Raman Spectroscopy

(2014) Paul Kühler et al.   NANO LETTERS

An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization

(2013) Daniel M. Hinckley et al.   JOURNAL OF CHEMICAL PHYSICS

In situ structure and dynamics of DNA origami determined through molecular dynamics simulations

(2013) J. Yoo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Gridiron Nanostructures Based on Four-Arm Junctions

(2013) D. Han et al.   SCIENCE

Construction of a 4 Zeptoliters Switchable 3D DNA Box Origami

(2012) Reza M. Zadegan et al.   ACS Nano

Sequence-dependent thermodynamics of a coarse-grained DNA model

(2012) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

Predicting the DNA Sequence Dependence of Nanopore Ion Current Using Atomic-Resolution Brownian Dynamics

(2012) Jeffrey Comer et al.   Journal of Physical Chemistry C

Cryo-EM structure of a 3D DNA-origami object

(2012) X.-c. Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

(2011) Thomas E. Ouldridge et al.   JOURNAL OF CHEMICAL PHYSICS

Challenges and opportunities for structural DNA nanotechnology

(2011) Andre V. Pinheiro et al.   Nature Nanotechnology

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures

(2011) Do-Nyun Kim et al.   NUCLEIC ACIDS RESEARCH

DNA Origami with Complex Curvatures in Three-Dimensional Space

(2011) D. Han et al.   SCIENCE

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Switching binary states of nanoparticle superlattices and dimer clusters by DNA strands

(2009) Mathew M. Maye et al.   Nature Nanotechnology

A DNA nanomachine that maps spatial and temporal pH changes inside living cells

(2009) Souvik Modi et al.   Nature Nanotechnology

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Measurement of the Torque on a Single Stretched and Twisted DNA Using Magnetic Tweezers

(2009) Francesco Mosconi et al.   PHYSICAL REVIEW LETTERS

Folding DNA into Twisted and Curved Nanoscale Shapes

(2009) H. Dietz et al.   SCIENCE

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

(2008) Leonardo G. Trabuco et al.   STRUCTURE