Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication

Parallel origins of photoperiod adaptation following dual domestications of common bean

(2019) James L Weller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Highly multiplexed AmpliSeq technology identifies novel variation of flowering time-related genes in soybean (Glycine max)

(2019) Eri Ogiso-Tanaka et al.   DNA RESEARCH

Rapid identification of consistent novel QTLs underlying long-juvenile trait in soybean by multiple genetic populations and genotyping-by-sequencing

(2019) Chao Fang et al.   MOLECULAR BREEDING

Evolutionary Insights into the Nature of Plant Domestication

(2019) Michael D. Purugganan   CURRENT BIOLOGY

Quantitative Trait Locus Mapping of Flowering Time and Maturity in Soybean Using Next-Generation Sequencing-Based Analysis

(2018) Lingping Kong et al.   Frontiers in Plant Science

Stepwise cis-Regulatory Changes in ZCN8 Contribute to Maize Flowering-Time Adaptation

(2018) Li Guo et al.   CURRENT BIOLOGY

Parallel selection on a dormancy gene during domestication of crops from multiple families

(2018) Min Wang et al.   NATURE GENETICS

De novo assembly of a Chinese soybean genome

(2018) Yanting Shen et al.   Science China-Life Sciences

Characterization of Two Growth Period QTLs Reveals Modification of PRR3 Genes During Soybean Domestication

(2018) Man-Wah Li et al.   PLANT AND CELL PHYSIOLOGY

Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield

(2017) Sijia Lu et al.   NATURE GENETICS

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

(2017) Maojun Wang et al.   NATURE GENETICS

Soybean domestication: the origin, genetic architecture and molecular bases

(2017) Eric J. Sedivy et al.   NEW PHYTOLOGIST

ZmCCT9enhances maize adaptation to higher latitudes

(2017) Cheng Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting the QTL-allele system conferring flowering date in a nested association mapping population of soybean using a novel procedure

(2017) Shuguang Li et al.   THEORETICAL AND APPLIED GENETICS

Identification of additional QTLs for flowering time by removing the effect of the maturity gene E1 in soybean

(2016) Si-jia LU et al.   Journal of Integrative Agriculture

A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants

(2015) Xingliang Ma et al.   Molecular Plant

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean

(2015) Lianjun Sun et al.   NATURE GENETICS

GmCOL1aandGmCOL1bFunction as Flowering Repressors in Soybean Under Long-Day Conditions

(2015) Dong Cao et al.   PLANT AND CELL PHYSIOLOGY

Allelic variants in the PRR37 gene and the human-mediated dispersal and diversification of sorghum

(2015) Robert R. Klein et al.   THEORETICAL AND APPLIED GENETICS

GmFT2a and GmFT5a Redundantly and Differentially Regulate Flowering through Interaction with and Upregulation of the bZIP Transcription Factor GmFDL19 in Soybean

(2014) Haiyang Nan et al.   PLoS One

Allelic Combinations of Soybean Maturity Loci E1, E2, E3 and E4 Result in Diversity of Maturity and Adaptation to Different Latitudes

(2014) Bingjun Jiang et al.   PLoS One

Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis

(2014) Xingliang Hou et al.   Nature Communications

A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes

(2013) Kenneth M. Olsen et al.   Annual Review of Plant Biology

Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes

(2013) Bon-Hyuk Koo et al.   Molecular Plant

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet

(2012) Pierre A. Pin et al.   CURRENT BIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Structural variation in the 5′ upstream region of photoperiod-insensitive alleles Ppd-A1a and Ppd-B1a identified in hexaploid wheat (Triticum aestivum L.), and their effect on heading time

(2012) Hidetaka Nishida et al.   MOLECULAR BREEDING

A conserved molecular basis for photoperiod adaptation in two temperate legumes

(2012) J. L. Weller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering

(2012) Z. Xia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum

(2011) R. L. Murphy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of Recently Derived FT Paralogs in Sunflower Domestication

(2010) Benjamin K. Blackman et al.   CURRENT BIOLOGY

Contributions of Flowering Time Genes to Sunflower Domestication and Improvement

(2010) B. K. Blackman et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Two Coordinately Regulated Homologs of FLOWERING LOCUS T Are Involved in the Control of Photoperiodic Flowering in Soybean

(2010) F. Kong et al.   PLANT PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetic structure and diversity of cultivated soybean (Glycine max (L.) Merr.) landraces in China

(2008) Yinghui Li et al.   THEORETICAL AND APPLIED GENETICS