Design of orthogonal regulatory systems for modulating gene expression in plants

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies

(2019) Caleb J. Bashor et al.   SCIENCE

Synchronous long-term oscillations in a synthetic gene circuit

(2016) Laurent Potvin-Trottier et al.   NATURE

Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops

(2016) Patrick M. Shih et al.   PLANT JOURNAL

A robust gene-stacking method utilizing yeast assembly for plant synthetic biology

(2016) Patrick M. Shih et al.   Nature Communications

Benchmarking of TALE- and CRISPR/dCas9-Based Transcriptional Regulators in Mammalian Cells for the Construction of Synthetic Genetic Circuits

(2016) Tina Lebar et al.   ACS Synthetic Biology

Core promoter sequence in yeast is a major determinant of expression level

(2015) Shai Lubliner et al.   GENOME RESEARCH

Standards for plant synthetic biology: a common syntax for exchange of DNA parts

(2015) Nicola J. Patron et al.   NEW PHYTOLOGIST

A library of synthetic transcription activator-like effector-activated promoters for coordinated orthogonal gene expression in plants

(2015) Kathleen Brückner et al.   PLANT JOURNAL

Designable DNA-binding domains enable construction of logic circuits in mammalian cells

(2014) Rok Gaber et al.   Nature Chemical Biology

In pursuit of design principles of regulatory sequences

(2014) Michal Levo et al.   NATURE REVIEWS GENETICS

Computational discovery of soybean promotercis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters

(2014) Wusheng Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Precise and reliable gene expression via standard transcription and translation initiation elements

(2013) Vivek K Mutalik et al.   NATURE METHODS

Tunable and Multifunctional Eukaryotic Transcription Factors Based on CRISPR/Cas

(2013) Fahim Farzadfard et al.   ACS Synthetic Biology

Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs

(2013) Nicolas Denancé et al.   Frontiers in Plant Science

Protein Modularity, Cooperative Binding, and Hybrid Regulatory States Underlie Transcriptional Network Diversification

(2012) Christopher R. Baker et al.   CELL

A Synthetic Biology Framework for Programming Eukaryotic Transcription Functions

(2012) Ahmad S. Khalil et al.   CELL

Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools

(2012) T. S. Ham et al.   NUCLEIC ACIDS RESEARCH

Extensive DNA-binding specificity divergence of a conserved transcription regulator

(2011) C. R. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

(2010) Polly M Fordyce et al.   NATURE BIOTECHNOLOGY

GAL4 GFP enhancer trap lines for analysis of stomatal guard cell development and gene expression

(2008) Michael J. Gardner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae

(2008) Kristy M Hawkins et al.   Nature Chemical Biology