Taxonomic assignment of arbuscular mycorrhizal fungi in an 18S metagenomic dataset: a case study with saltcedar (Tamarix aphylla)

The beneficial role of indigenous arbuscular mycorrhizal fungi in phytoremediation of wetland plants and tolerance to metal stress

(2023) Warda Sidhoum et al.   Archives of Environmental Protection

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Arbuscular mycorrhizal fungi affect total phenolic content and antimicrobial activity of Tamarix gallica in natural semi-arid Algerian areas

(2019) K. Bencherif et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Microkamienskia gen. nov. and Microkamienskia peruviana, a new arbuscular mycorrhizal fungus from Western Amazonia

(2019) Mike Anderson Corazon-Guivin et al.   NOVA HEDWIGIA

GenBank

(2019) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

High-level classification of the Fungi and a tool for evolutionary ecological analyses

(2018) Leho Tedersoo et al.   FUNGAL DIVERSITY

Racocetra crispa (Glomeromycotina) delimited by integrative evidence based on morphology, long continuous nuclear rDNA sequencing and phylogeny

(2018) Francisco Adriano de Souza et al.   MYCOLOGICAL PROGRESS

Subsoil arbuscular mycorrhizal fungal communities in arable soil differ from those in topsoil

(2018) Moisés A. Sosa-Hernández et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dominikia litorea, a new species in the Glomeromycotina, and biogeographic distribution of Dominikia

(2018) JANUSZ BŁASZKOWSKI et al.   Phytotaxa

Biogeography of arbuscular mycorrhizal fungi (Glomeromycota): a phylogenetic perspective on species distribution patterns

(2018) Sidney L. Stürmer et al.   MYCORRHIZA

Anthropogenic and soil environmental drivers of arbuscular mycorrhizal community composition differ between grassland ecosystems

(2018) Alice G. Tipton et al.   Botany

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi

(2017) Martti Vasar et al.   MYCORRHIZA

ITS fungal barcoding primers versus 18S AMF-specific primers reveal similar AMF-based diversity patterns in roots and soils of three mountain vineyards

(2017) Andrea Berruti et al.   Environmental Microbiology Reports

Reclamation negatively influences arbuscular mycorrhizal fungal community structure and diversity in coastal saline-alkaline land in Eastern China as revealed by Illumina sequencing

(2016) Xiangchao Cui et al.   APPLIED SOIL ECOLOGY

Soil and seasons affect arbuscular mycorrhizal fungi associated with Tamarix rhizosphere in arid and semi-arid steppes

(2016) Karima Bencherif et al.   APPLIED SOIL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

High-resolution community profiling of arbuscular mycorrhizal fungi

(2016) Klaus Schlaeppi et al.   NEW PHYTOLOGIST

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

(2015) Sara Varela-Cervero et al.   ENVIRONMENTAL MICROBIOLOGY

Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi

(2015) Miranda M. Hart et al.   NEW PHYTOLOGIST

Two new genera, Dominikia and Kamienskia, and D. disticha sp. nov. in Glomeromycota

(2015) Janusz Błaszkowski et al.   NOVA HEDWIGIA

Impact of soil salinity on arbuscular mycorrhizal fungi biodiversity and microflora biomass associated with Tamarix articulata Vahll rhizosphere in arid and semi-arid Algerian areas

(2015) Karima Bencherif et al.   SCIENCE OF THE TOTAL ENVIRONMENT

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Improved workflows for high throughput library preparation using the transposome-based nextera system

(2013) Sarah Lamble et al.   BMC BIOTECHNOLOGY

DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences

(2013) Maarja Öpik et al.   Botany

Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey

(2013) Ülle Saks et al.   Botany

Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies

(2013) Anne Chao et al.   ECOLOGICAL MONOGRAPHS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

(2012) Stéphane Mahé et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

(2011) Manuela Krüger et al.   NEW PHYTOLOGIST

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

Glomus indicum, a new arbuscular mycorrhizal fungus

(2010) Janusz Błaszkowski et al.   Botany

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach

(2009) Erica Lumini et al.   ENVIRONMENTAL MICROBIOLOGY

DNA-based species level detection ofGlomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi

(2009) Manuela Krüger et al.   NEW PHYTOLOGIST

Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi

(2008) Jaikoo Lee et al.   FEMS MICROBIOLOGY ECOLOGY