Major imprint of surface plankton on deep ocean prokaryotic structure and activity

Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations

(2020) Kasia Piwosz et al.   mSphere

Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes

(2020) Zihao Zhao et al.   Science Advances

Summer comes to the Southern Ocean: how phytoplankton shape bacterioplankton communities far into the deep dark sea

(2019) Inga Richert et al.   Ecosphere

Elevated carbon flux in deep waters of the South China Sea

(2019) Yung-Yen Shih et al.   Scientific Reports

High Growth Potential of Long-Term Starved Deep Ocean Opportunistic Heterotrophic Bacteria

(2019) Marta Sebastián et al.   Frontiers in Microbiology

Coupling carbon and energy fluxes in the North Pacific Subtropical Gyre

(2019) Eric Grabowski et al.   Nature Communications

Eukaryotic and cyanobacterial communities associated with marine snow particles in the oligotrophic Sargasso Sea

(2019) Regitze B. C. Lundgreen et al.   Scientific Reports

Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

(2019) Barbara Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

The Influence of Plankton Community Structure on Sinking Velocity and Remineralization Rate of Marine Aggregates

(2019) L. T. Bach et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Sinking particles promote vertical connectivity in the ocean microbiome

(2018) Mireia Mestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prokaryotic Niche Partitioning Between Suspended and Sinking Marine Particles

(2018) Manon T Duret et al.   Environmental Microbiology Reports

High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding

(2018) Andres Gutierrez-Rodriguez et al.   ISME Journal

Deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation

(2017) Marta Sebastián et al.   ENVIRONMENTAL MICROBIOLOGY

Temperature regulation of marine heterotrophic prokaryotes increases latitudinally as a breach between bottom-up and top-down controls

(2017) Xosé Anxelu G. Morán et al.   GLOBAL CHANGE BIOLOGY

Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor

(2017) Alma E Parada et al.   ISME Journal

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

(2017) Alyson E. Santoro et al.   LIMNOLOGY AND OCEANOGRAPHY

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics

(2017) Kristin Bergauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

(2017) Maria G. Pachiadaki et al.   SCIENCE

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

(2017) Zachary Landry et al.   mBio

Bacterial Succession on Sinking Particles in the Ocean's Interior

(2017) Erik A. Pelve et al.   Frontiers in Microbiology

Influence of plankton community structure on the sinking velocity of marine aggregates

(2016) L. T. Bach et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Drivers of fluorescent dissolved organic matter in the global epipelagic ocean

(2016) T. S. Catalá et al.   LIMNOLOGY AND OCEANOGRAPHY

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Microbial interactions lead to rapid micro-scale successions on model marine particles

(2016) Manoshi S. Datta et al.   Nature Communications

Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events

(2016) Marilou P. Sison-Mangus et al.   Frontiers in Microbiology

Phytoplankton across Tropical and Subtropical Regions of the Atlantic, Indian and Pacific Oceans

(2016) Marta Estrada et al.   PLoS One

Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum

(2016) Alexander B. Bochdansky et al.   Scientific Reports

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Water mass age and aging driving chromophoric dissolved organic matter in the dark global ocean

(2015) T. S. Catalá et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

(2015) Jacob A Cram et al.   ISME Journal

Global diversity and biogeography of deep-sea pelagic prokaryotes

(2015) Guillem Salazar et al.   ISME Journal

Phytoplankton morphology controls on marine snow sinking velocity

(2015) EC Laurenceau-Cornec et al.   MARINE ECOLOGY PROGRESS SERIES

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

(2015) Guillem Salazar et al.   MOLECULAR ECOLOGY

Dilution limits dissolved organic carbon utilization in the deep ocean

(2015) J. M. Arrieta et al.   SCIENCE

Turnover time of fluorescent dissolved organic matter in the dark global ocean

(2015) Teresa S. Catalá et al.   Nature Communications

Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump

(2015) S. Agusti et al.   Nature Communications

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

Phytoplankton morphology controls on marine snow sinking velocity

(2015) EC Laurenceau-Cornec et al.   MARINE ECOLOGY PROGRESS SERIES

Colonization in the Photic Zone and Subsequent Changes during Sinking Determine Bacterial Community Composition in Marine Snow

(2014) Stefan Thiele et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

(2014) Jacob A Cram et al.   ISME Journal

Global abundance of planktonic heterotrophic protists in the deep ocean

(2014) Massimo C Pernice et al.   ISME Journal

Succession of micro- and nanoplankton groups in ageing upwelled waters off Namibia

(2014) A. Hansen et al.   JOURNAL OF MARINE SYSTEMS

Temporal changes in particle-associated microbial communities after interception by nonlethal sediment traps

(2013) Gary R. LeCleir et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean

(2013) J Michael Beman et al.   ISME Journal

Patterns of plankton communities in subtropical waters off the Canary Islands during the late winter bloom

(2013) Claire Schmoker et al.   JOURNAL OF SEA RESEARCH

Large-scale geographical variation in prokaryotic abundance and production in meso- and bathypelagic zones of the central Pacific and Southern Ocean

(2013) Taichi Yokokawa et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial control of the dark end of the biological pump

(2013) Gerhard J. Herndl et al.   Nature Geoscience

Carbon export mediated by mesopelagic fishes in the northeast Pacific Ocean

(2013) P.C. Davison et al.   PROGRESS IN OCEANOGRAPHY

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Effects of phytoplankton community on production, size, and export of large aggregates: A world-ocean analysis

(2011) Lionel Guidi et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Trophic cycling and carbon export relationships in the California Current Ecosystem

(2011) Michael R. Stukel et al.   LIMNOLOGY AND OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior

(2010) Thomas Reinthaler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Molecular approach to determine contributions of the protist community to particle flux

(2009) Jessica Amacher et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS