Vertical Transmission of Gut Microbiome and Antimicrobial Resistance Genes in Infants Exposed to Antibiotics at Birth

Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants

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Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth

(2019) Yan Shao et al.   NATURE

The Washing Machine as a Reservoir for Transmission of Extended-Spectrum-Beta-Lactamase (CTX-M-15)-Producing Klebsiella oxytoca ST201 to Newborns

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Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

(2018) Moran Yassour et al.   Cell Host & Microbe

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

(2018) Pamela Ferretti et al.   Cell Host & Microbe

Meta-analysis of effects of exclusive breastfeeding on infant gut microbiota across populations

(2018) Nhan T. Ho et al.   Nature Communications

Microbial strain-level population structure and genetic diversity from metagenomes

(2017) Duy Tin Truong et al.   GENOME RESEARCH

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

Bacterial colonization and succession in a newly opened hospital

(2017) Simon Lax et al.   Science Translational Medicine

Strain profiling and epidemiology of bacterial species from metagenomic sequencing

(2017) Davide Albanese et al.   Nature Communications

Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome

(2017) Pia S. Pannaraj et al.   JAMA Pediatrics

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

(2017) Francesco Asnicar et al.   mSystems

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

(2016) Stephen Nayfach et al.   GENOME RESEARCH

Antimicrobial Resistance

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Significance of Staphylococcus epidermidis in Health Care-Associated Infections, from Contaminant to Clinically Relevant Pathogen: This Is a Wake-Up Call!

(2016) Micael Widerström   JOURNAL OF CLINICAL MICROBIOLOGY

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

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Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

(2016) Moran Yassour et al.   Science Translational Medicine

Antibiotics, birth mode, and diet shape microbiome maturation during early life

(2016) Nicholas A. Bokulich et al.   Science Translational Medicine

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

(2016) Katri Korpela et al.   Nature Communications

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Perinatal vertical transmission of antibiotic-resistant bacteria: a systematic review and proposed research strategy

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The impact of postnatal antibiotics on the preterm intestinal microbiome

(2014) Majd Dardas et al.   PEDIATRIC RESEARCH

Tetracycline resistance genes acquired at birth

(2013) Angela M. Alicea-Serrano et al.   ARCHIVES OF MICROBIOLOGY

Stratification of Risk of Early-Onset Sepsis in Newborns ≥34 Weeks’ Gestation

(2013) Gabriel J. Escobar et al.   PEDIATRICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The Role Played by Contaminated Surfaces in the Transmission of Nosocomial Pathogens

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Prodigal: prokaryotic gene recognition and translation initiation site identification

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CTX-M-producing Escherichia coli in a maternity ward: a likely community importation and evidence of mother-to-neonate transmission

(2010) V. Dubois et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Group B streptococcus colonization of pregnant women and their children observed on obstetric and neonatal wards of the University Hospital in Krakow, Poland

(2009) M. Strus et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Staphylococcus epidermidis — the 'accidental' pathogen

(2009) Michael Otto   NATURE REVIEWS MICROBIOLOGY

Outbreak of Multidrug-Resistant Serratia marcescens Infection in a Neonatal Intensive Care Unit

(2008) Lisa L. Maragakis et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY