Integrated Analysis of mRNA and microRNA Elucidates the Regulation of Glycyrrhizic Acid Biosynthesis in Glycyrrhiza uralensis Fisch

GCN5 modulates trichome initiation in Arabidopsis by manipulating histone acetylation of core trichome initiation regulator genes

(2019) Tianya Wang et al.   PLANT CELL REPORTS

Positive Selection of Squalene Synthase in Cucurbitaceae Plants

(2019) Jieying Qian et al.   International Journal of Genomics

Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth

(2019) Meijun He et al.   PLoS One

Structural and Functional Characterization of Dynamic Oligomerization in Burkholderia cenocepacia HMG-CoA Reductase

(2019) Riley B. Peacock et al.   BIOCHEMISTRY

Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data

(2018) Taemook Kim et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

The wheat TabZIP2 transcription factor is activated by the nutrient starvation-responsive SnRK3/CIPK protein kinase

(2018) Sukanya Luang et al.   PLANT MOLECULAR BIOLOGY

Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought

(2018) Wenrong Tan et al.   PLoS Genetics

Increase in isoflavonoid content in Glycine max cells transformed by the constitutively active Ca2+ independent form of the AtCPK1 gene

(2018) G.N. Veremeichik et al.   PHYTOCHEMISTRY

Cyclic GMP mediates abscisic acid-stimulated isoflavone synthesis in soybean sprouts

(2018) Caifeng Jiao et al.   FOOD CHEMISTRY

The SWI2/SNF2 Chromatin-Remodeling ATPase BRAHMA Regulates Chlorophyll Biosynthesis in Arabidopsis

(2017) Dong Zhang et al.   Molecular Plant

Spearmint R2R3-MYB transcription factor MsMYB negatively regulates monoterpene production and suppresses the expression of geranyl diphosphate synthase large subunit (MsGPPS .LSU )

(2017) Vaishnavi Amarr Reddy et al.   PLANT BIOTECHNOLOGY JOURNAL

MicroRNA156 improves drought stress tolerance in alfalfa ( Medicago sativa ) by silencing SPL13

(2017) Muhammad Arshad et al.   PLANT SCIENCE

An R2R3-type MYB transcription factor, GmMYB29, regulates isoflavone biosynthesis in soybean

(2017) Shanshan Chu et al.   PLoS Genetics

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

A novel glucuronosyltransferase has an unprecedented ability to catalyse continuous two-step glucuronosylation of glycyrrhetinic acid to yield glycyrrhizin

(2016) Guojie Xu et al.   NEW PHYTOLOGIST

Auxin response factors

(2016) John William Chandler   PLANT CELL AND ENVIRONMENT

Draft genome assembly and annotation of Glycyrrhiza uralensis , a medicinal legume

(2016) Keiichi Mochida et al.   PLANT JOURNAL

A Mutation in Plant-Specific SWI2/SNF2-Like Chromatin-Remodeling Proteins, DRD1 and DDM1, Delays Leaf Senescence in Arabidopsis thaliana

(2016) Eun Ju Cho et al.   PLoS One

Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells

(2015) Koji Miyamoto et al.   JOURNAL OF PLANT PHYSIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis

(2015) Zhichao Xu et al.   PLANT JOURNAL

Functional divergence of diterpene syntheses in the medicinal plant Salvia miltiorrhiza Bunge

(2015) Guanghong Cui et al.   PLANT PHYSIOLOGY

Natural Variation in Monoterpene Synthesis in Kiwifruit: Transcriptional Regulation of Terpene Synthases by NAC and ETHYLENE-INSENSITIVE3-Like Transcription Factors

(2015) Niels J. Nieuwenhuizen et al.   PLANT PHYSIOLOGY

A Systematic Review of the Anticancer Properties of Compounds Isolated from Licorice (Gancao)

(2015) Zheng-Hai Tang et al.   PLANTA MEDICA

Leveraging transcript quantification for fast computation of alternative splicing profiles

(2015) Gael P. Alamancos et al.   RNA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

MicroRNA156 as a promising tool for alfalfa improvement

(2014) Banyar Aung et al.   PLANT BIOTECHNOLOGY JOURNAL

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information

(2014) Nitish K. Mishra et al.   PLoS One

Comprehensive Analysis of Alternative Splicing in Digitalis purpurea by Strand-Specific RNA-Seq

(2014) Bin Wu et al.   PLoS One

Genome-wide analysis and molecular dissection of theSPLgene family inSalvia miltiorrhiza

(2013) Linsu Zhang et al.   Journal of Integrative Plant Biology

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Glycyrrhiza uralensis Transcriptome Landscape and Study of Phytochemicals

(2013) Jordan A. Ramilowski et al.   PLANT AND CELL PHYSIOLOGY

Over-expression of GmMYB39 leads to an inhibition of the isoflavonoid biosynthesis in soybean (Glycine max. L)

(2013) Xiaoqing Liu et al.   Plant Biotechnology Reports

Role of AGC kinases in plant growth and stress responses

(2012) Ana Victoria Garcia et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis

(2012) Samir Ben Chaabane et al.   NUCLEIC ACIDS RESEARCH

Critical roles of RNA-binding proteins in miRNA biogenesis in Arabidopsis

(2012) Guodong Ren et al.   RNA Biology

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

(2011) Liwen Wang et al.   BMC GENOMICS

cis- andtrans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in TwoArabidopsisSpecies and Their Allopolyploids

(2011) Danny W-K. Ng et al.   PLANT CELL

Triterpene Functional Genomics in Licorice for Identification of CYP72A154 Involved in the Biosynthesis of Glycyrrhizin

(2011) Hikaru Seki et al.   PLANT CELL

Metabolic profiling of roots of liquorice (Glycyrrhiza glabra) from different geographical areas by ESI/MS/MS and determination of major metabolites by LC-ESI/MS and LC-ESI/MS/MS

(2010) Paola Montoro et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS