Review of tools and algorithms for network motif discovery in biological networks

Disjoint motif discovery in biological network using pattern join method

(2019) Sabyasachi Patra et al.   IET Systems Biology

FSM: Fast and scalable network motif discovery for exploring higher-order network organizations

(2019) Tao Wang et al.   METHODS

An Efficient Network Motif Discovery Approach for Co-Regulatory Networks

(2018) Jiawei Luo et al.   IEEE Access

Motif Discovery in Biological Network Using Expansion Tree

(2018) Sabyasachi Patra et al.   Journal of Bioinformatics and Computational Biology

Network Motif Discovery: A GPU Approach

(2017) Wenqing Lin et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

An Efficient Sampling Algorithm for Network Motif Detection

(2017) Yinghan Chen et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Detection of Network Motif Based on a Novel Graph Canonization Algorithm from Transcriptional Regulation Networks

(2017) Jialu Hu et al.   MOLECULES

Network Analysis Reveals A Signaling Regulatory Loop in the PIK3CA -mutated Breast Cancer Predicting Survival Outcome

(2017) Shauna R. McGee et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Identification of large disjoint motifs in biological networks

(2016) Rasha Elhesha et al.   BMC BIOINFORMATICS

Mining integrated semantic networks for drug repositioning opportunities

(2016) Joseph Mullen et al.   PeerJ

Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients

(2016) Lianshuo Li et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human

(2015) Cheng Liang et al.   BIOINFORMATICS

A comparative study on network motif discovery algorithms

(2015) Yusuf Kavurucu   International Journal of Data Mining and Bioinformatics

Practical graph isomorphism, II

(2013) Brendan D. McKay et al.   JOURNAL OF SYMBOLIC COMPUTATION

Identification of breast cancer patients based on human signaling network motifs

(2013) Lina Chen et al.   Scientific Reports

Network motifs in the transcriptional regulation network of cervical carcinoma cells respond to EGF

(2012) Su Fang Wu et al.   ARCHIVES OF GYNECOLOGY AND OBSTETRICS

Building blocks of biological networks: a review on major network motif discovery algorithms

(2012) A. Masoudi-Nejad et al.   IET Systems Biology

An algorithm for network motif discovery in biological networks

(2012) Guimin Qin et al.   International Journal of Data Mining and Bioinformatics

Information storage, loop motifs, and clustered structure in complex networks

(2012) Joseph T. Lizier et al.   PHYSICAL REVIEW E

MODA: An efficient algorithm for network motif discovery in biological networks

(2010) Saeed Omidi et al.   GENES & GENETIC SYSTEMS

Kavosh: a new algorithm for finding network motifs

(2009) Zahra Kashani et al.   BMC BIOINFORMATICS

Building trophic modules into a persistent food web

(2008) M. Kondoh   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA