A novel motif-discovery algorithm to identify co-regulatory motifs in large transcription factor and microRNA co-regulatory networks in human

A Combination of Transcriptional and MicroRNA Regulation Improves the Stability of the Relative Concentrations of Target Genes

(2014) Andrea Riba et al.   PLoS Computational Biology

Identification of active transcription factor and miRNA regulatory pathways in Alzheimer’s disease

(2013) Wei Jiang et al.   BIOINFORMATICS

Searching for repetitions in biological networks: methods, resources and tools

(2013) S. Panni et al.   BRIEFINGS IN BIOINFORMATICS

Practical graph isomorphism, II

(2013) Brendan D. McKay et al.   JOURNAL OF SYMBOLIC COMPUTATION

QuateXelero: An Accelerated Exact Network Motif Detection Algorithm

(2013) Sahand Khakabimamaghani et al.   PLoS One

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits

(2013) Molly Megraw et al.   GENOME BIOLOGY

Roles for MicroRNAs in Conferring Robustness to Biological Processes

(2012) Margaret S. Ebert et al.   CELL

Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks

(2012) M. E. Beber et al.   Journal of the Royal Society Interface

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

NetMODE: Network Motif Detection without Nauty

(2012) Xin Li et al.   PLoS One

Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma

(2012) Jingchun Sun et al.   PLoS Computational Biology

Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power

(2011) Trey Ideker et al.   CELL

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

(2011) Chao Cheng et al.   PLoS Computational Biology

MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems

(2010) H. Herranz et al.   GENES & DEVELOPMENT

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

The interplay between transcription factors and microRNAs in genome-scale regulatory networks

(2009) Natalia J. Martinez et al.   BIOESSAYS

Kavosh: a new algorithm for finding network motifs

(2009) Zahra Kashani et al.   BMC BIOINFORMATICS

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

(2008) N. J. Martinez et al.   GENOME RESEARCH

Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures

(2008) R. J. Morgan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Regulation by Transcription Factors and MicroRNAs

(2008) O. Hobert   SCIENCE