Next-generation sequencing to elucidate adaptive stress response and plantaricin genes among Lactobacillus plantarum strains

Functional probiotic attributes and gene encoding plantaracin among variant Lactobacillus Plantarum strains

(2019) Asma Manzoor et al.   MICROBIAL PATHOGENESIS

Effects of Lactobacillus plantarum and Lactobacillus paracasei on the Peripheral Immune Response in Children with Celiac Disease Autoimmunity: A Randomized, Double-Blind, Placebo-Controlled Clinical Trial

(2019) Åsa Håkansson et al.   Nutrients

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete Genome Sequencing of Lactobacillus plantarum ZLP001, a Potential Probiotic That Enhances Intestinal Epithelial Barrier Function and Defense Against Pathogens in Pigs

(2018) Wei Zhang et al.   Frontiers in Physiology

Complete genome sequence of bacteriocin-producing Lactobacillus plantarum KLDS1.0391, a probiotic strain with gastrointestinal tract resistance and adhesion to the intestinal epithelial cells

(2017) Fang-Fang Jia et al.   GENOMICS

Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture

(2017) Mangesh V. Suryavanshi et al.   Standards in Genomic Sciences

A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies

(2017) Yu Cao et al.   Frontiers in Microbiology

Lactobacillus plantarum Strains Can Enhance Human Mucosal and Systemic Immunity and Prevent Non-steroidal Anti-inflammatory Drug Induced Reduction in T Regulatory Cells

(2017) Paul de Vos et al.   Frontiers in Immunology

Complete genome sequence of Lactobacillus paraplantarum L-ZS9, a probiotic starter producing class II bacteriocins

(2016) Lei Liu et al.   JOURNAL OF BIOTECHNOLOGY

Complete genome sequence of Lactobacillus plantarum LZ95, a potential probiotic strain producing bacteriocins and B-group vitamin riboflavin

(2016) Ping Li et al.   JOURNAL OF BIOTECHNOLOGY

Complete genome sequence of Lactobacillus plantarum LZ206, a potential probiotic strain with antimicrobial activity against food-borne pathogenic microorganisms

(2016) Ping Li et al.   JOURNAL OF BIOTECHNOLOGY

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Heterologous expression and purification of plantaricin NC8, a two-peptide bacteriocin against Salmonella spp. from Lactobacillus plantarum ZJ316

(2016) Han Jiang et al.   PROTEIN EXPRESSION AND PURIFICATION

Efficacy of Locally Isolated Lactic Acid Bacteria Against Antibiotic-Resistant Uropathogens

(2016) Asma Manzoor et al.   Jundishapur Journal of Microbiology

In vitro importance of probiotic Lactobacillus plantarum related to medical field

(2016) Mariadhas Valan Arasu et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean

(2015) Chen-Jian Liu et al.   GENOMICS

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

(2015) Zhihong Sun et al.   Nature Communications

Comparative genomic analysis of sevenMycoplasma hyosynoviaestrains

(2015) Eric A. Bumgardner et al.   MicrobiologyOpen

Lactobacillus pentosus var. plantarum C29 ameliorates memory impairment and inflammaging in a d-galactose-induced accelerated aging mouse model

(2014) Jae-Yeon Woo et al.   ANAEROBE

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Purification and characterisation of plantaricin ZJ008, a novel bacteriocin against Staphylococcus spp. from Lactobacillus plantarum ZJ008

(2014) Xuan Zhu et al.   FOOD CHEMISTRY

CRISPR-Cas systems for editing, regulating and targeting genomes

(2014) Jeffry D Sander et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

CRISPR–Cas9-assisted recombineering in Lactobacillus reuteri

(2014) Jee-Hwan Oh et al.   NUCLEIC ACIDS RESEARCH

Purification and Characterization of Plantaricin ZJ5, a New Bacteriocin Produced by Lactobacillus plantarum ZJ5

(2014) Da-Feng Song et al.   PLoS One

Inhibitory effect of plantaricin peptides (Pln E/F and J/K) against Escherichia coli

(2014) Gargi Pal et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Lactobacillus plantarum passage through an oro-gastro-intestinal tract simulator: Carrier matrix effect and transcriptional analysis of genes associated to stress and probiosis

(2013) P. Bove et al.   MICROBIOLOGICAL RESEARCH

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

(2013) Wenyan Jiang et al.   NATURE BIOTECHNOLOGY

Coverage Bias and Sensitivity of Variant Calling for Four Whole-genome Sequencing Technologies

(2013) Nora Rieber et al.   PLoS One

Regulation of intestinal homeostasis and immunity with probiotic lactobacilli

(2013) Peter van Baarlen et al.   TRENDS IN IMMUNOLOGY

Bile resistance mechanisms in Lactobacillus and Bifidobacterium

(2013) Lorena Ruiz et al.   Frontiers in Microbiology

Lactic acid bacteria producing B-group vitamins: a great potential for functional cereals products

(2012) Vittorio Capozzi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effects of lactobacillus plantarum ZJ316 on pig growth and pork quality

(2012) Cheng Suo et al.   BMC Veterinary Research

A bile salt hydrolase gene of Lactobacillus plantarum BBE7 with high cholesterol-removing activity

(2012) Z. Dong et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Comparative Proteomic Analysis of Lactobacillus plantarum WCFS1 and ΔctsR Mutant Strains Under Physiological and Heat Stress Conditions

(2012) Pasquale Russo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

(2012) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

Clinical trial:Lactobacillus plantarum299v (DSM 9843) improves symptoms of irritable bowel syndrome

(2012) Philippe Ducrotté   WORLD JOURNAL OF GASTROENTEROLOGY

Fast filtering for RNA homology search

(2011) D. L. Kolbe et al.   BIOINFORMATICS

Recommendations for the viability assessment of probiotics as concentrated cultures and in food matrices

(2011) Claude P. Champagne et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Involvement of the Mannose Phosphotransferase System of Lactobacillus plantarum WCFS1 in Peroxide Stress Tolerance

(2010) M. J. A. Stevens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells

(2010) Saskia van Hemert et al.   BMC MICROBIOLOGY

In vitro evaluation of Lactobacillus plantarum DSMZ 12028 as a probiotic: Emphasis on innate immunity

(2009) Marcella Cammarota et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Functional Analysis of Four Bile Salt Hydrolase and Penicillin Acylase Family Members in Lactobacillus plantarum WCFS1

(2008) J. M. Lambert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Life Under Stress: The Probiotic Stress Response and How it may be Manipulated

(2008) B. Corcoran et al.   CURRENT PHARMACEUTICAL DESIGN

Molecular Chaperones in Lactic Acid Bacteria: Physiological Consequences and Biochemical Properties

(2008) Shinya Sugimoto et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING