Local factors drive bacterial and microeukaryotic community composition in lake surface sediment collected across an altitudinal gradient

Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface

(2019) Lianna Poghosyan et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic Evidence for Simultaneous Optimization of Transcription and Translation through Codon Variants in the pmoCAB Operon of Type Ia Methanotrophs

(2019) Juan C. Villada et al.   mSystems

Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada

(2018) Matti O. Ruuskanen et al.   Frontiers in Microbiology

Characterization of sediment bacterial communities in plain lakes with different trophic statuses

(2017) Wei Huang et al.   MicrobiologyOpen

Regional and global elevational patterns of microbial species richness and evenness

(2016) Jianjun Wang et al.   ECOGRAPHY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

(2015) Laura Carugati et al.   Marine Genomics

Distinct soil bacterial communities along a small-scale elevational gradient in alpine tundra

(2015) Congcong Shen et al.   Frontiers in Microbiology

Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

(2014) Congcong Shen et al.   ECOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking microbial community structure to β-glucosidic function in soil aggregates

(2013) Vanessa L Bailey et al.   ISME Journal

Climate and species richness patterns of freshwater fish in North America and Europe

(2013) David Griffiths et al.   JOURNAL OF BIOGEOGRAPHY

Skipper Richness (Hesperiidae) Along Elevational Gradients in Brazilian Atlantic Forest

(2013) E Carneiro et al.   NEOTROPICAL ENTOMOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes

(2013) Emily B. Graham et al.   SOIL BIOLOGY & BIOCHEMISTRY

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Environmental factors influencing soil testate amoebae in herbaceous and shrubby vegetation along an altitudinal gradient in subarctic tundra (Abisko, Sweden)

(2012) Andrey N. Tsyganov et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Large-scale biodiversity patterns in freshwater phytoplankton

(2011) Maayke Stomp et al.   ECOLOGY

Microbes do not follow the elevational diversity patterns of plants and animals

(2010) Noah Fierer et al.   ECOLOGY

Contrasting patterns in elevational diversity between microorganisms and macroorganisms

(2010) Jianjun Wang et al.   JOURNAL OF BIOGEOGRAPHY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic Diversity of Eukaryotic Plankton Assemblages in Eastern Tibetan Lakes Differing by their Salinity and Altitude

(2009) Qinglong L. Wu et al.   MICROBIAL ECOLOGY

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE