Disrupting the disruptors: the consequences of mutations in mobile elements for ecologically important life history traits

Distributed phenomics with the un PAK project reveals the effects of mutations

(2019) Matthew T. Rutter et al.   PLANT JOURNAL

Gene type and mutation position influence responses in root traits across nutrient environments

(2019) Courtney Murren et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Transposons: a blessing curse

(2018) Manu J Dubin et al.   CURRENT OPINION IN PLANT BIOLOGY

Contribution of transposable elements in the plant's genome

(2018) Mahbod Sahebi et al.   GENE

Quantifying natural seasonal variation in mutation parameters with mutation accumulation lines

(2018) Matthew T. Rutter et al.   Ecology and Evolution

Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana

(2018) Mao-Lun Weng et al.   GENETICS

Patterns of transposable element variation and clinality in Drosophila

(2018) Jeffrey R. Adrion et al.   MOLECULAR ECOLOGY

The genomes and transposable elements in plants: are they friends or foes?

(2017) Nam-Soo Kim   Genes & Genomics

A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements

(2017) Stefan Oberlin et al.   GENOME RESEARCH

Fitness effects of mutation: testing genetic redundancy in Arabidopsis thaliana

(2017) M. T. Rutter et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolution of sequence-specific anti-silencing systems in Arabidopsis

(2017) Aoi Hosaka et al.   Nature Communications

What makes up plant genomes: The vanishing line between transposable elements and genes

(2016) Dongyan Zhao et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts

(2016) Alexandros Bousios et al.   CURRENT OPINION IN PLANT BIOLOGY

The Arabidopsis thaliana mobilome and its impact at the species level

(2016) Leandro Quadrana et al.   eLife

A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity

(2016) Hidetaka Ito et al.   Scientific Reports

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Applying ecological models to communities of genetic elements: the case of neutral theory

(2015) Stefan Linquist et al.   MOLECULAR ECOLOGY

Diversity and evolution of transposable elements in Arabidopsis

(2014) Zoé Joly-Lopez et al.   CHROMOSOME RESEARCH

Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis

(2014) Hongxing Yang et al.   PLANT JOURNAL

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

(2014) Danelle K. Seymour et al.   PLoS Genetics

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana

(2013) J. Agren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Phenotypic Variation among Allelic T-DNA Inserts in Arabidopsis thaliana

(2012) Megan E. Valentine et al.   PLoS One

The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

(2012) Nicole de la Chaux et al.   Mobile DNA

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

(2011) J. D. Hollister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking genotype to phenotype using the Arabidopsis unimutant collection

(2010) Ronan C. O’Malley et al.   PLANT JOURNAL

A triptych of the evolution of plant transposable elements

(2010) Maud I. Tenaillon et al.   TRENDS IN PLANT SCIENCE

The Contribution of Transposable Elements to Expressed Coding Sequence in Arabidopsis thaliana

(2009) Steven Lockton et al.   JOURNAL OF MOLECULAR EVOLUTION

Selective epigenetic control of retrotransposition in Arabidopsis

(2009) Marie Mirouze et al.   NATURE