Spatial variation in gene flow across a hybrid zone reveals causes of reproductive isolation and asymmetric introgression in wall lizards

Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard

(2019) Pedro Andrade et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Genomic evidence for asymmetric introgression by sexual selection in the common wall lizard

(2018) Weizhao Yang et al.   MOLECULAR ECOLOGY

Chemical communication, sexual selection, and introgression in wall lizards

(2017) Hannah E. A. MacGregor et al.   EVOLUTION

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

(2017) Clément Rougeux et al.   Genome Biology and Evolution

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

(2017) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Disruption of the ATXN1–CIC complex causes a spectrum of neurobehavioral phenotypes in mice and humans

(2017) Hsiang-Chih Lu et al.   NATURE GENETICS

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

(2017) Drew R. Schield et al.   Ecology and Evolution

Interspecific competition, hybridization, and reproductive isolation in secondary contact: missing perspectives on males and females

(2017) Sara E Lipshutz   Current Zoology

Experimental contact zones reveal causes and targets of sexual selection in hybridizing lizards

(2016) Hannah E. A. MacGregor et al.   FUNCTIONAL ECOLOGY

“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements

(2016) Marte Sodeland et al.   Genome Biology and Evolution

Male behaviour drives assortative reproduction during the initial stage of secondary contact

(2016) R. J. P. Heathcote et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee SubspeciesApis mellifera sinisxinyuann. ssp

(2016) Chao Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

A beak size locus in Darwins finches facilitated character displacement during a drought

(2016) S. Lamichhaney et al.   SCIENCE

Sexual selection drives asymmetric introgression in wall lizards

(2015) Geoffrey M. While et al.   ECOLOGY LETTERS

Functional Organization of the Genome May Shape the Species Boundary in the House Mouse

(2015) Václav Janoušek et al.   MOLECULAR BIOLOGY AND EVOLUTION

Widespread primary, but geographically restricted secondary, human introductions of wall lizards,Podarcis muralis

(2015) Sozos N. Michaelides et al.   MOLECULAR ECOLOGY

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Intraspecific Colour Variation among Lizards in Distinct Island Environments Enhances Local Camouflage

(2015) Kate L. A. Marshall et al.   PLoS One

Population genomics of parallel hybrid zones in the mimetic butterflies,H. melpomeneandH. erato

(2014) Nicola J. Nadeau et al.   GENOME RESEARCH

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

Characterisation of nine European wall lizard (Podarcis muralis) microsatellite loci of utility across sub-species

(2014) Robert J. P. Heathcote et al.   Conservation Genetics Resources

Persistence across Pleistocene ice ages in Mediterranean and extra-Mediterranean refugia: phylogeographic insights from the common wall lizard

(2013) Daniele Salvi et al.   BMC EVOLUTIONARY BIOLOGY

Genetic variation in the green anole lizard (Anolis carolinensis) reveals island refugia and a fragmented Florida during the quaternary

(2013) Marc Tollis et al.   GENETICA

From southern refugia to the northern range margin: genetic population structure of the common wall lizard,Podarcis muralis

(2013) Franz Gassert et al.   JOURNAL OF BIOGEOGRAPHY

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Social behavior, chemical communication, and adult neurogenesis: Studies of scent mark function in Podarcis wall lizards

(2012) Enrique Font et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Homeward bound: factors affecting homing ability in a polymorphic lizard

(2012) S. Scali et al.   JOURNAL OF ZOOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Deletions in chromosome 6p22.3-p24.3, including ATXN1, are associated with developmental delay and autism spectrum disorders

(2012) Patrícia BS Celestino-Soper et al.   Molecular Cytogenetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Cryptic niche conservatism among evolutionary lineages of an invasive lizard

(2011) Ulrich Schulte et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Bayesian estimation of genomic clines

(2011) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomics of isolation in hybrids

(2011) Z. Gompert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics