Microbial utilization of rice root residue-derived carbon explored by DNA stable-isotope probing

Structure and assembly cues for rhizospheric nirK - and nirS -type denitrifier communities in long-term fertilized soils

(2018) Shengpeng Hou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use

(2017) Melissa M. Arcand et al.   Frontiers in Microbiology

Changes in soil microbial community, enzyme activities and organic matter fractions under long-term straw return in north-central China

(2016) Shicheng Zhao et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Phylogenetic organization of bacterial activity

(2016) Ember M Morrissey et al.   ISME Journal

Microbial utilization of rice straw and its derived biochar in a paddy soil

(2016) Fuxia Pan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

(2016) Susanne Kramer et al.   Frontiers in Microbiology

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

(2016) Charles Pepe-Ranney et al.   Frontiers in Microbiology

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fine root decomposition, nutrient mobilization and fungal communities in a pine forest ecosystem

(2015) Ang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils

(2014) Baozhan Wang et al.   ISME Journal

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Response of the population size and community structure of Paenibacillus spp. to different fertilization regimes in a long-term experiment of red soil

(2014) Ning Ling et al.   PLANT AND SOIL

Comparative secretome analysis of Streptomyces scabiei during growth in the presence or absence of potato suberin

(2014) Doaa Komeil et al.   Proteome Science

Impact of fine litter chemistry on lignocellulolytic enzyme efficiency during decomposition of maize leaf and root in soil

(2013) Bilal Ahmad Zafar Amin et al.   BIOGEOCHEMISTRY

Microbial utilisation of biochar-derived carbon

(2013) Mark Farrell et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The variable response of soil microorganisms to trace concentrations of low molecular weight organic substrates of increasing complexity

(2013) Jennifer A.J. Dungait et al.   SOIL BIOLOGY & BIOCHEMISTRY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Probing potential microbial coupling of carbon and nitrogen cycling during decomposition of maize residue by 13C-DNA-SIP

(2013) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

The effects of glucose loading rates on bacterial and fungal growth in soil

(2013) Stephanie Reischke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups

(2012) S. A. Placella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Roots contribute more to refractory soil organic matter than above-ground crop residues, as revealed by a long-term field experiment

(2011) Thomas Kätterer et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrolysis of lignocellulosic feedstock by novel cellulases originating from Pseudomonas sp. CL3 for fermentative hydrogen production

(2011) Chieh-Lun Cheng et al.   BIORESOURCE TECHNOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Identification of microbial communities that assimilate substrate from root cap cells in an aerobic soil using a DNA-SIP approach

(2011) Yong Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term exclusion of plant-inputs to soil reduces the functional capacity of microbial communities to mineralise recalcitrant root-derived carbon sources

(2011) Eric Paterson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach

(2011) Chol Gyu Lee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria

(2010) Kathryn E. R. Davis et al.   ENVIRONMENTAL MICROBIOLOGY

Decomposition of Bt transgenic rice residues and response of soil microbial community in rapeseed–rice cropping system

(2010) Haohao Lu et al.   PLANT AND SOIL

Dominant effects of litter substrate quality on the difference between leaf and root decomposition process above- and belowground

(2010) Saori Fujii et al.   SOIL BIOLOGY & BIOCHEMISTRY

Streptomyces Development in Colonies and Soils

(2009) A. Manteca et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen

(2009) Stefanie Schellenberger et al.   ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Digging deeper: fine-root responses to rising atmospheric CO2 concentration in forested ecosystems

(2009) Colleen M. Iversen   NEW PHYTOLOGIST

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

(2009) Alex Copeland et al.   Standards in Genomic Sciences

13C and 15N stabilization dynamics in soil organic matter fractions during needle and fine root decomposition

(2008) Jeffrey A. Bird et al.   ORGANIC GEOCHEMISTRY

Comparison of bacterial community structures at main habitats in paddy field ecosystem based on DGGE analysis

(2007) Susumu Asakawa et al.   SOIL BIOLOGY & BIOCHEMISTRY