Genome-wide transcriptome analysis of Aspergillus fumigatus exposed to osmotic stress reveals regulators of osmotic and cell wall stresses that are SakAHOG1 and MpkC dependent

The contribution of Aspergillus fumigatus stress responses to virulence and antifungal resistance

(2016) Neil A. Brown et al.   JOURNAL OF MICROBIOLOGY

TheAspergillus fumigatusSchASCH9kinase modulates SakAHOG1MAP kinase activity and it is essential for virulence

(2016) Patrícia Alves de Castro et al.   MOLECULAR MICROBIOLOGY

Mitogen activated protein kinases SakAHOG1and MpkC collaborate forAspergillus fumigatusvirulence

(2016) Ariane Cristina Mendes de Oliveira Bruder Nascimento et al.   MOLECULAR MICROBIOLOGY

Hitting the Caspofungin Salvage Pathway of Human-Pathogenic Fungi with the Novel Lasso Peptide Humidimycin (MDN-0010)

(2015) Vito Valiante et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Potential Microbiological Effects of Higher Dosing of Echinocandins

(2015) William J. Steinbach et al.   CLINICAL INFECTIOUS DISEASES

The Aspergillus fumigatus sitA Phosphatase Homologue Is Important for Adhesion, Cell Wall Integrity, Biofilm Formation, and Virulence

(2015) Vinícius Leite Pedro Bom et al.   EUKARYOTIC CELL

Osmostress-induced gene expression - a model to understand how stress-activated protein kinases (SAPKs) regulate transcription

(2015) Eulàlia de Nadal et al.   FEBS Journal

High osmolarity glycerol response PtcB phosphatase is important forAspergillus fumigatusvirulence

(2015) Lizziane K. Winkelströter et al.   MOLECULAR MICROBIOLOGY

Condition-specific genetic interaction maps reveal crosstalk between the cAMP/PKA and the HOG MAPK pathways in the activation of the general stress response

(2015) J. Gutin et al.   Molecular Systems Biology

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

Using RNA-Seq Data to Evaluate Reference Genes Suitable for Gene Expression Studies in Soybean

(2015) Aldrin Kay-Yuen Yim et al.   PLoS One

Systematic functional profiling of transcription factor networks in Cryptococcus neoformans

(2015) Kwang-Woo Jung et al.   Nature Communications

The Aspergillus fumigatus cell wall integrity signaling pathway: drug target, compensatory pathways, and virulence

(2015) Vito Valiante et al.   Frontiers in Microbiology

Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus

(2015) Robert Altwasser et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The role of AtfA and HOG MAPK pathway in stress tolerance in conidia of Aspergillus fumigatus

(2014) Daisuke Hagiwara et al.   FUNGAL GENETICS AND BIOLOGY

Functional Analysis of atfA Gene to Stress Response in Pathogenic Thermal Dimorphic Fungus Penicillium marneffei

(2014) Panjaphorn Nimmanee et al.   PLoS One

Aspergillus fumigatus and Related Species

(2014) J. A. Sugui et al.   Cold Spring Harbor Perspectives in Medicine

Up-date on Diagnostic Strategies of Invasive Aspergillosis

(2013) Michaela Lackner et al.   CURRENT PHARMACEUTICAL DESIGN

Molecular mechanisms linking the evolutionary conserved TORC1-Sch9 nutrient signalling branch to lifespan regulation inSaccharomyces cerevisiae

(2013) Erwin Swinnen et al.   FEMS YEAST RESEARCH

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Functional Analysis of the Aspergillus nidulans Kinome

(2013) Colin P. De Souza et al.   PLoS One

NikA/TcsC Histidine Kinase Is Involved in Conidiation, Hyphal Morphology, and Responses to Osmotic Stress and Antifungal Chemicals in Aspergillus fumigatus

(2013) Daisuke Hagiwara et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Ksp1 Kinase Regulates Autophagy via the Target of Rapamycin Complex 1 (TORC1) Pathway

(2012) Midori Umekawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Two-Component Sensor Kinase TcsC and Its Role in Stress Resistance of the Human-Pathogenic Mold Aspergillus fumigatus

(2012) Allison McCormick et al.   PLoS One

Tackling Human Fungal Infections

(2012) G. D. Brown et al.   SCIENCE

Hidden Killers: Human Fungal Infections

(2012) G. D. Brown et al.   Science Translational Medicine

New resources for functional analysis of omics data for the genus Aspergillus

(2011) Benjamin M Nitsche et al.   BMC GENOMICS

Shaping the fungal adaptome – Stress responses of Aspergillus fumigatus

(2011) Thomas Hartmann et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Aspergillus nidulans transcription factor AtfA interacts with the MAPK SakA to regulate general stress responses, development and spore functions

(2011) Fernando Lara-Rojas et al.   MOLECULAR MICROBIOLOGY

Methods for usingGalleria mellonellaas a model host to study fungal pathogenesis

(2011) Beth Burgwyn Fuchs et al.   Virulence

Comparative Transcriptome Analysis of the CO2 Sensing Pathway Via Differential Expression of Carbonic Anhydrase in Cryptococcus neoformans

(2010) M. S. Kim et al.   GENETICS

AtfA bZIP-type transcription factor regulates oxidative and osmotic stress responses in Aspergillus nidulans

(2010) Anita Balázs et al.   MOLECULAR GENETICS AND GENOMICS

Toward a Genomic View of the Gene Expression Program Regulated by Osmostress in Yeast

(2010) Fernando Martínez-Montañés et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis

(2009) T. R. T. Dagenais et al.   CLINICAL MICROBIOLOGY REVIEWS

Aspergillus oryzae atfA controls conidial germination and stress tolerance

(2009) Kazutoshi Sakamoto et al.   FUNGAL GENETICS AND BIOLOGY

Comparative genomics of MAP kinase and calcium–calcineurin signalling components in plant and human pathogenic fungi

(2009) Nicolas Rispail et al.   FUNGAL GENETICS AND BIOLOGY

Characterization of bZip-Type Transcription Factor AtfA with Reference to Stress Responses of Conidia ofAspergillus nidulans

(2008) Daisuke HAGIWARA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Aspergillus oryzae atfB encodes a transcription factor required for stress tolerance in conidia

(2008) Kazutoshi Sakamoto et al.   FUNGAL GENETICS AND BIOLOGY

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Distinct regions of ATF/CREB proteins Atf1 and Pcr1 control recombination hotspot ade6-M26 and the osmotic stress response

(2008) J. Gao et al.   NUCLEIC ACIDS RESEARCH

Multiple Pathways Differentially Regulate Global Oxidative Stress Responses in Fission Yeast

(2007) Dongrong Chen et al.   MOLECULAR BIOLOGY OF THE CELL