Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus

Identification of a Key Lysine Residue in Heat Shock Protein 90 Required for Azole and Echinocandin Resistance in Aspergillus fumigatus

(2014) Frédéric Lamoth et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Aspergillus fumigatusdevoid of cell wall β-1,3-glucan is viable, massively sheds galactomannan and is killed by septum formation inhibitors

(2014) Karl Dichtl et al.   MOLECULAR MICROBIOLOGY

Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0

(2013) Michael Weber et al.   BMC Systems Biology

Bacterium Induces Cryptic Meroterpenoid Pathway in the Pathogenic FungusAspergillus fumigatus

(2013) Claudia C. König et al.   CHEMBIOCHEM

Effect of cell wall integrity stress and RlmA transcription factor on asexual development and autolysis in Aspergillus nidulans

(2013) Zsuzsanna Kovács et al.   FUNGAL GENETICS AND BIOLOGY

Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression

(2012) Sebastian Müller et al.   BMC GENOMICS

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes

(2012) Sebastian Vlaic et al.   BMC Systems Biology

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach

(2012) Jörg Linde et al.   BMC Systems Biology

Role of the Guanine Nucleotide Exchange Factor Rom2 in Cell Wall Integrity Maintenance of Aspergillus fumigatus

(2012) Sweta Samantaray et al.   EUKARYOTIC CELL

Deciphering cell wall integrity signalling in Aspergillus fumigatus: identification and functional characterization of cell wall stress sensors and relevant Rho GTPases

(2012) Karl Dichtl et al.   MOLECULAR MICROBIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Mitogen-Activated Protein Kinase Signaling in Plant-Interacting Fungi: Distinct Messages from Conserved Messengers

(2012) Louis-Philippe Hamel et al.   PLANT CELL

Characterization of Rhodamine-123 as a Tracer Dye for Use In In vitro Drug Transport Assays

(2012) Samantha Forster et al.   PLoS One

An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells

(2012) Lanay Tierney et al.   Frontiers in Microbiology

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Analysis of theAspergillus fumigatusProteome Reveals Metabolic Changes and the Activation of the Pseurotin A Biosynthesis Gene Cluster in Response to Hypoxia

(2011) Martin Vödisch et al.   JOURNAL OF PROTEOME RESEARCH

CADRE: the Central Aspergillus Data REpository 2012

(2011) J. Mabey Gilsenan et al.   NUCLEIC ACIDS RESEARCH

Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells

(2010) Jörg Linde et al.   BMC Systems Biology

Interaction of phagocytes with filamentous fungi

(2010) Axel A Brakhage et al.   CURRENT OPINION IN MICROBIOLOGY

Echinocandin Antifungal Drugs in Fungal Infections

(2010) Sharon C.-A. Chen et al.   DRUGS

FungiFun: A web-based application for functional categorization of fungal genes and proteins

(2010) Steffen Priebe et al.   FUNGAL GENETICS AND BIOLOGY

The high-osmolarity glycerol (HOG) and cell wall integrity (CWI) signalling pathways interplay: a yeast dialogue between MAPK routes

(2010) Jose Manuel Rodríguez-Peña et al.   YEAST

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis

(2009) T. R. T. Dagenais et al.   CLINICAL MICROBIOLOGY REVIEWS

Our Paths Might Cross: the Role of the Fungal Cell Wall Integrity Pathway in Stress Response and Cross Talk with Other Stress Response Pathways

(2009) Beth Burgwyn Fuchs et al.   EUKARYOTIC CELL

The MpkA MAP kinase module regulates cell wall integrity signaling and pyomelanin formation in Aspergillus fumigatus

(2009) Vito Valiante et al.   FUNGAL GENETICS AND BIOLOGY

Comparative genomics of MAP kinase and calcium–calcineurin signalling components in plant and human pathogenic fungi

(2009) Nicolas Rispail et al.   FUNGAL GENETICS AND BIOLOGY

The High Osmotic Response and Cell Wall Integrity Pathways Cooperate to Regulate Transcriptional Responses to Zymolyase-induced Cell Wall Stress inSaccharomyces cerevisiae

(2009) Raúl García et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS

The Sequential Activation of the Yeast HOG and SLT2 Pathways Is Required for Cell Survival to Cell Wall Stress

(2008) Clara Bermejo et al.   MOLECULAR BIOLOGY OF THE CELL