Dynamic properties of noise and Her6 levels are optimized by miR‐9, allowing the decoding of the Her6 oscillator

The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment

(2019) Thomas Burgold et al.   EMBO JOURNAL

Repressive Gene Regulation Synchronizes Development with Cellular Metabolism

(2019) Justin J. Cassidy et al.   CELL

Author Correction: Challenges in measuring and understanding biological noise

(2019) Nils Eling et al.   NATURE REVIEWS GENETICS

Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

(2019) Cerys S. Manning et al.   Nature Communications

Modulation of Phase Shift between Wnt and Notch Signaling Oscillations Controls Mesoderm Segmentation

(2018) Katharina F. Sonnen et al.   CELL

Dynamic Ligand Discrimination in the Notch Signaling Pathway

(2018) Nagarajan Nandagopal et al.   CELL

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

(2018) Jeffrey A. Farrell et al.   SCIENCE

Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data

(2018) Kieran R Campbell et al.   Nature Communications

Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics

(2018) Andreas Sagner et al.   PLOS BIOLOGY

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis

(2018) Isabelle Bergiers et al.   eLife

Identification and Single-Cell Functional Characterization of an Endodermally Biased Pluripotent Substate in Human Embryonic Stem Cells

(2018) Thomas F. Allison et al.   Stem Cell Reports

Dynamic control of neural stem cells by bHLH factors

(2018) Ryoichiro Kageyama et al.   NEUROSCIENCE RESEARCH

CRISPR/Cas9-Mediated Zebrafish Knock-in as a Novel Strategy to Study Midbrain-Hindbrain Boundary Development

(2017) Gokul Kesavan et al.   Frontiers in Neuroanatomy

Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes

(2017) Nick E. Phillips et al.   PLoS Computational Biology

Visualizing and Quantifying Intracellular Behavior and Abundance of the Core Circadian Clock Protein PERIOD2

(2016) Nicola J. Smyllie et al.   CURRENT BIOLOGY

Oscillatory control of Delta-like1 in cell interactions regulates dynamic gene expression and tissue morphogenesis

(2016) Hiromi Shimojo et al.   GENES & DEVELOPMENT

Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation

(2016) Nick E Phillips et al.   eLife

Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock

(2016) Alexis B Webb et al.   eLife

A method for high-throughput PCR-based genotyping of larval zebrafish tail biopsies

(2016) Robert N. Wilkinson et al.   BIOTECHNIQUES

Quantitative dynamic imaging of immune cell signalling using lentiviral gene transfer

(2015) J. Bagnall et al.   Integrative Biology

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo

(2015) Miguel A Moreno-Mateos et al.   NATURE METHODS

MicroRNA control of protein expression noise

(2015) J. M. Schmiedel et al.   SCIENCE

Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system

(2014) U. Irion et al.   DEVELOPMENT

prdm12b specifies the p1 progenitor domain and reveals a role for V1 interneurons in swim movements

(2014) Denise A. Zannino et al.   DEVELOPMENTAL BIOLOGY

microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states

(2014) Marc Goodfellow et al.   Nature Communications

TALEN-mediated precise genome modification by homologous recombination in zebrafish

(2013) Yao Zu et al.   NATURE METHODS

Dynamical structure underlying inverse stochastic resonance and its implications

(2013) Muhammet Uzuntarla et al.   PHYSICAL REVIEW E

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system

(2013) Li-En Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Roles of Pulsing in Genetic Circuits

(2013) J. H. Levine et al.   SCIENCE

miRNAs confer phenotypic robustness to gene networks by suppressing biological noise

(2013) Velia Siciliano et al.   Nature Communications

Genetic visualization of notch signaling in mammalian neurogenesis

(2012) Itaru Imayoshi et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Single-Cell-Resolution Imaging of the Impact of Notch Signaling and Mitosis on Segmentation Clock Dynamics

(2012) Emilie A. Delaune et al.   DEVELOPMENTAL CELL

miR-9 Controls the Timing of Neurogenesis through the Direct Inhibition of Antagonistic Factors

(2012) Marion Coolen et al.   DEVELOPMENTAL CELL

MicroRNA9 regulates neural stem cell differentiation by controlling Hes1 expression dynamics in the developing brain

(2012) Siok-Lay Tan et al.   GENES TO CELLS

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Comparative and Evolutionary Analysis of the HES/HEY Gene Family Reveal Exon/Intron Loss and Teleost Specific Duplication Events

(2012) Mi Zhou et al.   PLoS One

MicroRNA-9 Modulates Hes1 Ultradian Oscillations by Forming a Double-Negative Feedback Loop

(2012) Boyan Bonev et al.   Cell Reports

Cellular Decision Making and Biological Noise: From Microbes to Mammals

(2011) Gábor Balázsi et al.   CELL

Live transgenic reporters of the vertebrate embryo's Segmentation Clock

(2011) Daniele Soroldoni et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

MicroRNA-9 Reveals Regional Diversity of Neural Progenitors along the Anterior-Posterior Axis

(2011) Boyan Bonev et al.   DEVELOPMENTAL CELL

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

The benefits of noise in neural systems: bridging theory and experiment

(2011) Mark D. McDonnell et al.   NATURE REVIEWS NEUROSCIENCE

A MicroRNA Imparts Robustness against Environmental Fluctuation during Development

(2009) Xin Li et al.   CELL

Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells

(2009) Tibor Kalmar et al.   PLOS BIOLOGY

What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology

(2009) Mark D. McDonnell et al.   PLoS Computational Biology

MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary

(2008) Christoph Leucht et al.   NATURE NEUROSCIENCE

Design principles of biochemical oscillators

(2008) Béla Novák et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Oscillations in Notch Signaling Regulate Maintenance of Neural Progenitors

(2008) Hiromi Shimojo et al.   NEURON

High-resolution in situ hybridization to whole-mount zebrafish embryos

(2007) Christine Thisse et al.   Nature Protocols