Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome

New insights into intestinal phages

(2020) R. Sausset et al.   Mucosal Immunology

Manipulation of the Innate Immune Response by Varicella Zoster Virus

(2020) Chelsea Gerada et al.   Frontiers in Immunology

Beyond Just Bacteria: Functional Biomes in the Gut Ecosystem Including Virome, Mycobiome, Archaeome and Helminths

(2020) Ravichandra Vemuri et al.   Microorganisms

Dietary Fructose and Microbiota-Derived Short-Chain Fatty Acids Promote Bacteriophage Production in the Gut Symbiont Lactobacillus reuteri

(2019) Jee-Hwan Oh et al.   Cell Host & Microbe

Broad Bactericidal Activity of the Myoviridae Bacteriophage Lysins LysAm24, LysECD7, and LysSi3 against Gram-Negative ESKAPE Pathogens

(2019) Nataliia Antonova et al.   Viruses-Basel

Gut Microbiota in Patients With Irritable Bowel Syndrome—A Systematic Review

(2019) Rapat Pittayanon et al.   GASTROENTEROLOGY

Human Virome and Disease: High-Throughput Sequencing for Virus Discovery, Identification of Phage-Bacteria Dysbiosis and Development of Therapeutic Approaches with Emphasis on the Human Gut

(2019) Tasha M. Santiago-Rodriguez et al.   Viruses-Basel

Functional paralysis of human natural killer cells by alphaherpesviruses

(2019) Tessa Mollie Campbell et al.   PLoS Pathogens

Virome–host interactions in intestinal health and disease

(2019) Sang-Uk Seo et al.   Current Opinion in Virology

Studying the gut virome in the metagenomic era: challenges and perspectives

(2019) Sanzhima Garmaeva et al.   BMC BIOLOGY

Human NK Cells and Herpesviruses: Mechanisms of Recognition, Response and Adaptation

(2019) Mariella Della Chiesa et al.   Frontiers in Microbiology

Gut Bacteriophage: Current Understanding and Challenges

(2019) Thomas D. S. Sutton et al.   Frontiers in Endocrinology

Good Bug, Bad Bug: Breaking through Microbial Stereotypes

(2018) Mihai Cirstea et al.   Cell Host & Microbe

Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes

(2018) Geicho Nakatsu et al.   GASTROENTEROLOGY

Urbanization and the gut microbiota in health and inflammatory bowel disease

(2018) Tao Zuo et al.   Nature Reviews Gastroenterology & Hepatology

Archaea Are Interactive Components of Complex Microbiomes

(2018) Christine Moissl-Eichinger et al.   TRENDS IN MICROBIOLOGY

Enteric Virome Sensing—Its Role in Intestinal Homeostasis and Immunity

(2018) Rebecca Metzger et al.   Viruses-Basel

Viruses Seen by Our Cells: The Role of Viral RNA Sensors

(2018) Elias A. Said et al.   Journal of Immunology Research

The Complex Interplay between Chronic Inflammation, the Microbiome, and Cancer: Understanding Disease Progression and What We Can Do to Prevent It

(2018) Heather Armstrong et al.   Cancers

Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study

(2018) Corrie M. Whisner et al.   BMC MICROBIOLOGY

Enteric fungal microbiota dysbiosis and ecological alterations in colorectal cancer

(2018) Olabisi Oluwabukola Coker et al.   GUT

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome

(2018) Arnau Vich Vila et al.   Science Translational Medicine

Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome

(2017) Julien Tap et al.   GASTROENTEROLOGY

The Gut Microbiome in Irritable Bowel Syndrome and Other Functional Bowel Disorders

(2017) Yehuda Ringel   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

Alterations of gut microbiota in patients with irritable bowel syndrome: A systematic review and meta-analysis

(2017) Xiaojun Zhuang et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota

(2017) Christian Milani et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

(2017) Guoyan Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Molecular characterization of the intestinal microbiota in patients with and without abdominal bloating

(2016) Tamar Ringel-Kulka et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans

(2016) Ron Sender et al.   CELL

Rome IV—Functional GI Disorders: Disorders of Gut-Brain Interaction

(2016) Douglas A. Drossman et al.   GASTROENTEROLOGY

Irritable bowel syndrome

(2016) Paul Enck et al.   Nature Reviews Disease Primers

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

The human gut microbiota and virome: Potential therapeutic implications

(2015) Emidio Scarpellini et al.   DIGESTIVE AND LIVER DISEASE

The Intestinal Microbiota and Irritable Bowel Syndrome

(2015) Yehuda Ringel et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Gut Inflammation and Immunity: What Is the Role of the Human Gut Virome?

(2015) Alfredo Focà et al.   MEDIATORS OF INFLAMMATION

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Can Plant Viruses Cross the Kingdom Border and Be Pathogenic to Humans?

(2015) Fanny Balique et al.   Viruses-Basel

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

(2015) Simon Roux et al.   eLife

Review article: evidence for the role of gut microbiota in irritable bowel syndrome and its potential influence on therapeutic targets

(2014) H. L. DuPont   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

The Virome in Mammalian Physiology and Disease

(2014) Herbert W. Virgin   CELL

Kingdom-Agnostic Metagenomics and the Importance of Complete Characterization of Enteric Microbial Communities

(2014) Jason M. Norman et al.   GASTROENTEROLOGY

A role for the gut microbiota in IBS

(2014) Stephen M. Collins   Nature Reviews Gastroenterology & Hepatology

Characterization of virus-like particles associated with the human faecal and caecal microbiota

(2014) Lesley Hoyles et al.   RESEARCH IN MICROBIOLOGY

Exploiting gut bacteriophages for human health

(2014) Marion Dalmasso et al.   TRENDS IN MICROBIOLOGY

Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries

(2014) Jônatas S Abrahão et al.   Virology Journal

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

Cell intrinsic immunity spreads to bystander cells via the intercellular transfer of cGAMP

(2013) Andrea Ablasser et al.   NATURE

Resident viruses and their interactions with the immune system

(2013) Breck A Duerkop et al.   NATURE IMMUNOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

A Roadmap to the Human Virome

(2013) Eric Delwart   PLoS Pathogens

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Intestinal microbiota in functional bowel disorders: a Rome foundation report

(2012) Magnus Simrén et al.   GUT

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

(2012) I. M. Carroll et al.   NEUROGASTROENTEROLOGY AND MOTILITY

An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota

(2011) Ian B Jeffery et al.   GUT

Genome–virome interactions: examining the role of common viral infections in complex disease

(2011) Ellen F. Foxman et al.   NATURE REVIEWS MICROBIOLOGY

The good viruses: viral mutualistic symbioses

(2011) Marilyn J. Roossinck   NATURE REVIEWS MICROBIOLOGY

Latent herpesvirus infection arms NK cells

(2010) D. W. White et al.   BLOOD

Viral diversity and dynamics in an infant gut

(2008) Mya Breitbart et al.   RESEARCH IN MICROBIOLOGY