Cyanobacterial multi-copy chromosomes and their replication

Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs

(2019) Maria A Schumacher et al.   NUCLEIC ACIDS RESEARCH

A new role for Escherichia coli Dam DNA methylase in prevention of aberrant chromosomal replication

(2019) Nalini Raghunathan et al.   NUCLEIC ACIDS RESEARCH

Coordination of Polyploid Chromosome Replication with Cell Size and Growth in a Cyanobacterium

(2019) Ryudo Ohbayashi et al.   mBio

Polyploidy in halophilic archaea: regulation, evolutionary advantages, and gene conversion

(2019) Katharina Ludt et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Cytosine N4-Methylation via M.Ssp6803II Is Involved in the Regulation of Transcription, Fine- Tuning of DNA Replication and DNA Repair in the Cyanobacterium Synechocystis sp. PCC 6803

(2019) Katrin Gärtner et al.   Frontiers in Microbiology

Carbon-free production of 2-deoxy-scyllo-inosose (DOI) in cyanobacterium Synechococcus elongatus PCC 7942

(2018) Satoru Watanabe et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp. PCC 6803

(2018) Martin Hagemann et al.   DNA RESEARCH

ParA-like protein influences the distribution of multi-copy chromosomes in cyanobacterium Synechococcus elongatus PCC 7942

(2018) Satoru Watanabe et al.   MICROBIOLOGY-SGM

DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids

(2018) Hao Luo et al.   NUCLEIC ACIDS RESEARCH

Mycobacterial DnaB helicase intein as oxidative stress sensor

(2018) Danielle S. Kelley et al.   Nature Communications

Protein gradients on the nucleoid position the carbon-fixing organelles of cyanobacteria

(2018) Joshua S MacCready et al.   eLife

A promiscuous split intein with expanded protein engineering applications

(2017) Adam J. Stevens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanobacteria Maintain Constant Protein Concentration despite Genome Copy-Number Variation

(2017) Xiao-yu Zheng et al.   Cell Reports

Salt-Dependent Conditional Protein Splicing of an Intein from Halobacterium salinarum

(2016) Julie N. Reitter et al.   BIOCHEMISTRY

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program

(2016) Alexander Klotz et al.   CURRENT BIOLOGY

Cyanobacterial metabolic engineering for biofuel and chemical production

(2016) Neal J Oliver et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Protein splicing of a recombinase intein induced by ssDNA and DNA damage

(2016) Christopher W. Lennon et al.   GENES & DEVELOPMENT

The ploidy level of Synechocystis sp. PCC 6803 is highly variable and is influenced by growth phase and by chemical and physical external parameters

(2016) Karolin Zerulla et al.   MICROBIOLOGY-SGM

Ultrastructure of compacted DNA in cyanobacteria by high-voltage cryo-electron tomography

(2016) Kazuyoshi Murata et al.   Scientific Reports

Chloroplast DNA Copy Number Changes during Plant Development in Organelle DNA Polymerase Mutants

(2016) Stewart A. Morley et al.   Frontiers in Plant Science

The chromosome copy number of the hyperthermophilic archaeon Thermococcus kodakarensis KOD1

(2015) Sebastiaan K. Spaans et al.   EXTREMOPHILES

Diversification of DnaA dependency for DNA replication in cyanobacterial evolution

(2015) Ryudo Ohbayashi et al.   ISME Journal

Post-translational environmental switch of RadA activity by extein–intein interactions in protein splicing

(2015) Natalya I. Topilina et al.   NUCLEIC ACIDS RESEARCH

Intensive DNA Replication and Metabolism during the Lag Phase in Cyanobacteria

(2015) Satoru Watanabe et al.   PLoS One

The essential gene set of a photosynthetic organism

(2015) Benjamin E. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent Advances in the Identification of Replication Origins Based on the Z-curve Method

(2014) Feng Gao   CURRENT GENOMICS

Management of multipartite genomes: the Vibrio cholerae model

(2014) Marie-Eve Val et al.   CURRENT OPINION IN MICROBIOLOGY

Comparative Genome Analysis of the Closely Related Synechocystis Strains PCC 6714 and PCC 6803

(2014) M. Kopf et al.   DNA RESEARCH

Enigmatic Distribution, Evolution, and Function of Inteins

(2014) Olga Novikova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Undesigned Selection for Replication Termination of Bacterial Chromosomes

(2014) Nobuaki Kono et al.   JOURNAL OF MOLECULAR BIOLOGY

A split intein T7 RNA polymerase for transcriptional AND-logic

(2014) Yolanda Schaerli et al.   NUCLEIC ACIDS RESEARCH

Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle

(2014) T. Nakayama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The plastid ancestor originated among one of the major cyanobacterial lineages

(2014) Jesús A. G. Ochoa de Alda et al.   Nature Communications

Polyploidy in haloarchaea: advantages for growth and survival

(2014) Karolin Zerulla et al.   Frontiers in Microbiology

Dynamic composition, shaping and organization of plastid nucleoids

(2014) Marta Powikrowska et al.   Frontiers in Plant Science

Enzymes involved in organellar DNA replication in photosynthetic eukaryotes

(2014) Takashi Moriyama et al.   Frontiers in Plant Science

DNA replication depends on photosynthetic electron transport in cyanobacteria

(2013) Ryudo Ohbayashi et al.   FEMS MICROBIOLOGY LETTERS

Faster Protein Splicing with theNostoc punctiformeDnaE Intein Using Non-native Extein Residues

(2013) Manoj Cheriyan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Chloroplast DNA Replication Is Regulated by the Redox State Independently of Chloroplast Division in Chlamydomonas reinhardtii

(2013) Y. Kabeya et al.   PLANT PHYSIOLOGY

Regulating DNA Replication in Bacteria

(2013) K. Skarstad et al.   Cold Spring Harbor Perspectives in Biology

Chromosomal Organization and Segregation in Pseudomonas aeruginosa

(2013) Isabelle Vallet-Gely et al.   PLoS Genetics

Measures of Compositional Strand Bias Related to Replication Machinery and its Applications

(2012) Kazuharu Arakawa et al.   CURRENT GENOMICS

Characterization of the minimal replicon of pHM300 and independent copy number control of major and minor chromosomes ofHaloferax mediterranei

(2012) Xiaoqing Liu et al.   FEMS MICROBIOLOGY LETTERS

DNA adenine methyltransferase (Dam) controls the expression of the cytotoxic enterotoxin (act) gene of Aeromonas hydrophila via tRNA modifying enzyme-glucose-inhibited division protein (GidA)

(2012) Tatiana E. Erova et al.   GENE

Ultrafast Protein Splicing is Common among Cyanobacterial Split Inteins: Implications for Protein Engineering

(2012) Neel H. Shah et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Light-dependent and asynchronous replication of cyanobacterial multi-copy chromosomes

(2012) Satoru Watanabe et al.   MOLECULAR MICROBIOLOGY

Spatial and Temporal Organization of Chromosome Duplication and Segregation in the Cyanobacterium Synechococcus elongatus PCC 7942

(2012) Anna H. Chen et al.   PLoS One

Spatial ordering of chromosomes enhances the fidelity of chromosome partitioning in cyanobacteria

(2012) I. H. Jain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ploidy in cyanobacteria

(2011) Marco Griese et al.   FEMS MICROBIOLOGY LETTERS

Participation of Chromosome Segregation Protein ParAI of Vibrio cholerae in Chromosome Replication

(2011) R. Kadoya et al.   JOURNAL OF BACTERIOLOGY

Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli

(2011) Monika Maciąg et al.   Microbial Cell Factories

Identification of the oriC region and its influence on heterocyst development in the filamentous cyanobacterium Anabaena sp. strain PCC 7120

(2011) Y. Zhou et al.   MICROBIOLOGY-SGM

Signature proteins for the major clades of Cyanobacteria

(2010) Radhey S Gupta et al.   BMC EVOLUTIONARY BIOLOGY

An Extreme Thermophile, Thermus thermophilus, Is a Polyploid Bacterium

(2010) N. Ohtani et al.   JOURNAL OF BACTERIOLOGY

Genome Copy Numbers and Gene Conversion in Methanogenic Archaea

(2010) C. Hildenbrand et al.   JOURNAL OF BACTERIOLOGY

Mechanisms for maintenance, replication, and repair of the chloroplast genome in plants

(2010) B. L. Nielsen et al.   JOURNAL OF EXPERIMENTAL BOTANY

RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis

(2010) Beth A. Rowan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC

(2010) Tsutomu Katayama et al.   NATURE REVIEWS MICROBIOLOGY

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

G-language genome analysis environment with REST and SOAP web service interfaces

(2010) K. Arakawa et al.   NUCLEIC ACIDS RESEARCH

Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium

(2010) Liang Ran et al.   PLoS One

Spatially Ordered Dynamics of the Bacterial Carbon Fixation Machinery

(2010) D. F. Savage et al.   SCIENCE

Circadian Gating of the Cell Cycle Revealed in Single Cyanobacterial Cells

(2010) Q. Yang et al.   SCIENCE

DNA Adenine Methylation Is Required to Replicate Both Vibrio cholerae Chromosomes Once per Cell Cycle

(2010) Gaëlle Demarre et al.   PLoS Genetics

Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index

(2009) Kazuharu Arakawa et al.   BMC GENOMICS

The naturally splitNpuDnaE intein exhibits an extraordinarily high rate in the proteintrans-splicing reaction

(2009) Joachim Zettler et al.   FEBS LETTERS

DiaA Dynamics Are Coupled with Changes in Initial Origin Complexes Leading to Helicase Loading

(2009) Kenji Keyamura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insensitivity of chloroplast gene expression to DNA methylation

(2009) Daniela Ahlert et al.   MOLECULAR GENETICS AND GENOMICS

Metabolism, cell growth and the bacterial cell cycle

(2009) Jue D. Wang et al.   NATURE REVIEWS MICROBIOLOGY

How a cyanobacterium tells time

(2008) Guogang Dong et al.   CURRENT OPINION IN MICROBIOLOGY

Spatial organization of a replicating bacterial chromosome

(2008) I. A. Berlatzky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies

(2008) Anjana Srivatsan et al.   PLoS Genetics