Dynamic composition, shaping and organization of plastid nucleoids

The functions of WHIRLY1 and REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 in cross tolerance responses in plants: a hypothesis

(2014) C. H. Foyer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

On the Fate of Plastid DNA Molecules during Leaf Development: Response to the Golczyk et al. Commentary

(2014) Delene J. Oldenburg et al.   PLANT CELL

Chloroplast DNA in Mature and Senescing Leaves: A Reappraisal

(2014) Hieronim Golczyk et al.   PLANT CELL

Recent advances in the study of chloroplast gene expression and its evolution

(2014) Yusuke Yagi et al.   Frontiers in Plant Science

WHIRLY1 is a major organizer of chloroplast nucleoids

(2014) Karin Krupinska et al.   Frontiers in Plant Science

Identification of WHIRLY1 as a Factor Binding to the Promoter of the Stress- and Senescence-Associated Gene HvS40

(2013) Karin Krupinska et al.   JOURNAL OF PLANT GROWTH REGULATION

AtECB1/MRL7, a Thioredoxin-Like Fold Protein with Disulfide Reductase Activity, Regulates Chloroplast Gene Expression and Chloroplast Biogenesis in Arabidopsis thaliana

(2013) Qing-Bo Yua et al.   Molecular Plant

SVR4 (suppressor of variegation 4) and SVR4-like: two proteins with a role in proper organization of the chloroplast genetic machinery

(2013) Marta Powikrowska et al.   PHYSIOLOGIA PLANTARUM

PRDA1, a Novel Chloroplast Nucleoid Protein, is Required for Early Chloroplast Development and is Involved in the Regulation of Plastid Gene Expression in Arabidopsis

(2013) Jiangwei Qiao et al.   PLANT AND CELL PHYSIOLOGY

Chloroplast DNA Replication Is Regulated by the Redox State Independently of Chloroplast Division in Chlamydomonas reinhardtii

(2013) Y. Kabeya et al.   PLANT PHYSIOLOGY

Virus-induced gene silencing of pea CHLI and CHLD affects tetrapyrrole biosynthesis, chloroplast development and the primary metabolic network

(2013) Tao Luo et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Architectural organization in E. coli nucleoid

(2012) Mirjana Macvanin et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Plastid-to-nucleus communication, signals controlling the running of the plant cell

(2012) Juan de Dios Barajas-López et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Higher-order chromatin structure: bridging physics and biology

(2012) Geoffrey Fudenberg et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Phosphoproteomics ofArabidopsischloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16

(2012) Björn Ingelsson et al.   FEBS LETTERS

Yar1 Protects the Ribosomal Protein Rps3 from Aggregation

(2012) Barbara Koch et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Core of Chloroplast Nucleoids Contains Architectural SWIB Domain Proteins

(2012) J. Melonek et al.   PLANT CELL

Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis

(2012) Koichi Kobayashi et al.   PLANT JOURNAL

Effects of Reduced Chloroplast Gene Copy Number on Chloroplast Gene Expression in Maize

(2012) D. B. Udy et al.   PLANT PHYSIOLOGY

New insights into plastid nucleoid structure and functionality

(2012) Karin Krupinska et al.   PLANTA

ABC1K atypical kinases in plants: filling the organellar kinase void

(2012) Peter K. Lundquist et al.   TRENDS IN PLANT SCIENCE

Essential nucleoid proteins in early chloroplast development

(2012) Jeannette Pfalz et al.   TRENDS IN PLANT SCIENCE

Chromatin higher-order structures and gene regulation

(2011) Guohong Li et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Pervasive regulation of nucleoid structure and function by nucleoid-associated proteins

(2011) Sylvie Rimsky et al.   CURRENT OPINION IN MICROBIOLOGY

The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation

(2011) Karsten Liere et al.   JOURNAL OF PLANT PHYSIOLOGY

A physical approach to segregation and folding of the Caulobacter crescentus genome

(2011) Remus T. Dame et al.   MOLECULAR MICROBIOLOGY

SUPPRESSOR OF VARIEGATION4, a New var2 Suppressor Locus, Encodes a Pioneer Protein that Is Required for Chloroplast Biogenesis

(2011) Fei Yu et al.   Molecular Plant

A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage

(2011) Laurent Cappadocia et al.   NUCLEIC ACIDS RESEARCH

Two Novel Proteins, MRL7 and Its Paralog MRL7-L, Have Essential but Functionally Distinct Roles in Chloroplast Development and Are Involved in Plastid Gene Expression Regulation in Arabidopsis

(2011) Jiangwei Qiao et al.   PLANT AND CELL PHYSIOLOGY

The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus

(2011) Peter Kindgren et al.   PLANT JOURNAL

Chloroplast genomes of photosynthetic eukaryotes

(2011) Beverley R. Green   PLANT JOURNAL

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

(2011) W. Majeran et al.   PLANT PHYSIOLOGY

Identification of Essential Subunits in the Plastid-Encoded RNA Polymerase Complex Reveals Building Blocks for Proper Plastid Development

(2011) S. Steiner et al.   PLANT PHYSIOLOGY

HMGN5/NSBP1: A new member of the HMGN protein family that affects chromatin structure and function

(2010) Mark Rochman et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The YlmG protein has a conserved function related to the distribution of nucleoids in chloroplasts and cyanobacteria

(2010) Yukihiro Kabeya et al.   BMC PLANT BIOLOGY

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

(2010) Douglas F Browning et al.   CURRENT OPINION IN MICROBIOLOGY

Targeted knock-out of a gene encoding sulfite reductase in the mossPhyscomitrella patensaffects gametophytic and sporophytic development

(2010) Gertrud Wiedemann et al.   FEBS LETTERS

Mechanisms for maintenance, replication, and repair of the chloroplast genome in plants

(2010) B. L. Nielsen et al.   JOURNAL OF EXPERIMENTAL BOTANY

RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis

(2010) Beth A. Rowan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

Crystal Structures of DNA-Whirly Complexes and Their Role inArabidopsisOrganelle Genome Repair

(2010) Laurent Cappadocia et al.   PLANT CELL

Plastidial Thioredoxin z Interacts with Two Fructokinase-Like Proteins in a Thiol-Dependent Manner: Evidence for an Essential Role in Chloroplast Development in Arabidopsis and Nicotiana benthamiana

(2010) B. Arsova et al.   PLANT CELL

In vivo effects of NbSiR silencing on chloroplast development in Nicotiana benthamiana

(2010) Yong-Won Kang et al.   PLANT MOLECULAR BIOLOGY

Whirly1 in chloroplasts associates with intron containing RNAs and rarely co-localizes with nucleoids

(2010) Joanna Melonek et al.   PLANTA

Analysis of oligomeric protein complexes in the chloroplast sub-proteome of nucleic acid-binding proteins from mustard reveals potential redox regulators of plastid gene expression

(2010) Yvonne Schröter et al.   PROTEOMICS

Conservation of POPs, the Plant Organellar DNA Polymerases, in Eukaryotes

(2010) Takashi Moriyama et al.   PROTIST

A novel variant of ferredoxin-dependent sulfite reductase having preferred substrate specificity for nitrite in the unicellular red algaCyanidioschyzon merolae

(2009) Kohsuke Sekine et al.   BIOCHEMICAL JOURNAL

Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU

(2009) Michael Berger et al.   EMBO REPORTS

Plastid localization of the PEND protein is mediated by a noncanonical transit peptide

(2009) Kimihiro Terasawa et al.   FEBS Journal

Subcellular localization of rice histone deacetylases in organelles

(2009) Pil Joong Chung et al.   FEBS LETTERS

Protein Occupancy Landscape of a Bacterial Genome

(2009) Tiffany Vora et al.   MOLECULAR CELL

Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle

(2009) Uwe Rauwolf et al.   MOLECULAR GENETICS AND GENOMICS

The Chlamydomonas Chloroplast HLP Protein Is Required for Nucleoid Organization and Genome Maintenance

(2009) Daniel Karcher et al.   Molecular Plant

Effects of macromolecular crowding and DNA looping on gene regulation kinetics

(2009) Gene-Wei Li et al.   Nature Physics

ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing

(2009) Yannick Jacob et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Arrested Differentiation of Proplastids into Chloroplasts in Variegated Leaves Characterized by Plastid Ultrastructure and Nucleoid Morphology

(2009) Wataru Sakamoto et al.   PLANT AND CELL PHYSIOLOGY

Recruitment of AtWHY1 and AtWHY3 by a distal element upstream of the kinesin gene AtKP1 to mediate transcriptional repression

(2009) Ji-Yuan Xiong et al.   PLANT MOLECULAR BIOLOGY

Histones: Annotating Chromatin

(2008) Eric I. Campos et al.   Annual Review of Genetics

Reconstructing evolution: Gene transfer from plastids to the nucleus

(2008) Ralph Bock et al.   BIOESSAYS

The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes

(2008) Martijn S. Luijsterburg et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

DNA dynamics vary according to macrodomain topography in theE. colichromosome

(2008) Olivier Espeli et al.   MOLECULAR MICROBIOLOGY

A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis

(2008) J. Prikryl et al.   NUCLEIC ACIDS RESEARCH

The dynamic thiol–disulphide redox proteome of the Arabidopsis thaliana chloroplast as revealed by differential electrophoretic mobility

(2008) Elke Ströher et al.   PHYSIOLOGIA PLANTARUM

A Heterocomplex of Iron Superoxide Dismutases Defends Chloroplast Nucleoids against Oxidative Stress and Is Essential for Chloroplast Development in Arabidopsis

(2008) F. Myouga et al.   PLANT CELL

Single-Stranded DNA-Binding Protein Whirly1 in Barley Leaves Is Located in Plastids and the Nucleus of the Same Cell

(2008) E. Grabowski et al.   PLANT PHYSIOLOGY

The chromosome partitioning protein, ParB, is required for cytokinesis in Caulobacter crescentus

(2003) Dane A. Mohl et al.   MOLECULAR MICROBIOLOGY