Comparative Whole-Genome Phylogeny of Animal, Environmental, and Human Strains Confirms the Genogroup Organization and Diversity of the Stenotrophomonas maltophilia Complex

Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways

(2019) Anne Sophie Bourrel et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

(2019) Maria F. Mojica et al.   mBio

Are animals a source of Stenotrophomonas maltophilia in human infections? Contributions of a nationwide molecular study

(2018) Aurélie Jayol et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches

(2018) Joerg Steinmann et al.   Frontiers in Microbiology

GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas

(2018) Pablo Vinuesa et al.   Frontiers in Microbiology

Gene exchange drives the ecological success of a multi-host bacterial pathogen

(2018) Emily J. Richardson et al.   Nature Ecology & Evolution

Dietary trehalose enhances virulence of epidemic Clostridium difficile

(2018) J. Collins et al.   NATURE

Stenotrophomonas maltophilia healthcare-associated infections: identification of two main pathogenic genetic backgrounds

(2017) C. Corlouer et al.   JOURNAL OF HOSPITAL INFECTION

Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex

(2017) Luz E. Ochoa-Sánchez et al.   Frontiers in Microbiology

Double-Face Meets the Bacterial World: The Opportunistic Pathogen Stenotrophomonas maltophilia

(2017) Felipe Lira et al.   Frontiers in Microbiology

Identification and analysis of integrons and cassette arrays in bacterial genomes

(2016) Jean Cury et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics of Environmental and ClinicalStenotrophomonas maltophiliaStrains with Different Antibiotic Resistance Profiles

(2015) Benjamin Youenou et al.   Genome Biology and Evolution

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial species delineation using whole genome sequences

(2015) Neha J. Varghese et al.   NUCLEIC ACIDS RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Variations in the sales and sales patterns of veterinary antimicrobial agents in 25 European countries

(2014) K. Grave et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Stenotrophomonas maltophilia: an Emerging Global Opportunistic Pathogen

(2012) J. S. Brooke   CLINICAL MICROBIOLOGY REVIEWS

From Environment to Man: Genome Evolution and Adaptation of Human Opportunistic Bacterial Pathogens

(2012) Fabien Aujoulat et al.   Genes

A Stenotrophomonas maltophilia Multilocus Sequence Typing Scheme for Inferring Population Structure

(2009) S. Kaiser et al.   JOURNAL OF BACTERIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Association of Stenotrophomonas maltophilia infection with lower airway disease in the horse: A retrospective case series

(2009) Lotte Winther et al.   VETERINARY JOURNAL

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT