From Environment to Man: Genome Evolution and Adaptation of Human Opportunistic Bacterial Pathogens

Serratia marcescensInfections and Outbreaks in Neonatal Intensive Care Units

(2014) A. Dessì et al.   JOURNAL OF CHEMOTHERAPY

Stenotrophomonas maltophilia: an Emerging Global Opportunistic Pathogen

(2012) J. S. Brooke   CLINICAL MICROBIOLOGY REVIEWS

Gene gain and loss events in Rickettsia and Orientia species

(2011) Kalliopi Georgiades et al.   Biology Direct

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

(2011) Da-Qiang Wu et al.   BMC GENOMICS

Multilocus Sequence-Based Analysis Delineates a Clonal Population of Agrobacterium (Rhizobium) radiobacter (Agrobacterium tumefaciens) of Human Origin

(2011) F. Aujoulat et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Aeromonas veronii Strain B565

(2011) Y. Li et al.   JOURNAL OF BACTERIOLOGY

Genome of Ochrobactrum anthropi ATCC 49188T, a Versatile Opportunistic Pathogen and Symbiont of Several Eukaryotic Hosts

(2011) P. S. G. Chain et al.   JOURNAL OF BACTERIOLOGY

Genetic Characterization Indicates that a Specific Subpopulation of Pseudomonas aeruginosa Is Associated with Keratitis Infections

(2011) R. M. K. Stewart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Streptococcus mitis: walking the line between commensalism and pathogenesis

(2011) J. Mitchell   Molecular Oral Microbiology

Complex Evolutionary History of the Aeromonas veronii Group Revealed by Host Interaction and DNA Sequence Data

(2011) Adam C. Silver et al.   PLoS One

Genomes of the Most Dangerous Epidemic Bacteria Have a Virulence Repertoire Characterized by Fewer Genes but More Toxin-Antitoxin Modules

(2011) Kalliopi Georgiades et al.   PLoS One

Evolutionary dynamics of bacteria in a human host environment

(2011) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative diffusion assay to assess efficacy of topical antimicrobial agents against Pseudomonas aeruginosa in burns care

(2011) Fabien Aujoulat et al.   Annals of Clinical Microbiology and Antimicrobials

Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses

(2011) Fábio O. Pedrosa et al.   PLoS Genetics

Pseudomonas aeruginosa Genomic Structure and Diversity

(2011) Jens Klockgether et al.   Frontiers in Microbiology

Acetic Acid Bacteria, Newly Emerging Symbionts of Insects

(2010) E. Crotti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa

(2010) Andreas Dotsch et al.   BMC GENOMICS

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

(2010) Jean-Claude Ogier et al.   BMC GENOMICS

The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection

(2010) J. M. Janda et al.   CLINICAL MICROBIOLOGY REVIEWS

How Pseudomonas aeruginosa adapts to various environments: a metabolomic approach

(2010) Eliane Frimmersdorf et al.   ENVIRONMENTAL MICROBIOLOGY

The various lifestyles of the Burkholderia cepacia complex species: a tribute to adaptation

(2010) Ludovic Vial et al.   ENVIRONMENTAL MICROBIOLOGY

Protein secretion systems in Pseudomonas aeruginosa: A wealth of pathogenic weapons

(2010) Sophie Bleves et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

Gluconobacter as Well as Asaia Species, Newly Emerging Opportunistic Human Pathogens among Acetic Acid Bacteria

(2010) C. Alauzet et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Herbaspirillum Species Bacteremia in a Pediatric Oncology Patient

(2010) E. D. Ziga et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Accessory Genome of Pseudomonas aeruginosa

(2010) V. L. Kung et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7

(2010) Paul H. Roy et al.   PLoS One

Bacterial pathogen evolution: breaking news

(2010) Robert W. Jackson et al.   TRENDS IN GENETICS

Interkingdom signaling between pathogenic bacteria and Caenorhabditis elegans

(2010) Jay L. Mellies et al.   TRENDS IN MICROBIOLOGY

Pathogen-pathogen interaction

(2010) Merrill Singer   Virulence

Pseudomonas aeruginosaMicroevolution during Cystic Fibrosis Lung Infection Establishes Clones with Adapted Virulence

(2009) Alessandra Bragonzi et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Massive comparative genomic analysis reveals convergent evolution of specialized bacteria

(2009) Vicky Merhej et al.   Biology Direct

Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

(2009) Paul Wilkinson et al.   BMC GENOMICS

Genotypic comparison of Pantoea agglomerans plant and clinical strains

(2009) Fabio Rezzonico et al.   BMC MICROBIOLOGY

Multilocus sequence typing supports the hypothesis that Ochrobactrum anthropi displays a human-associated subpopulation

(2009) Sara Romano et al.   BMC MICROBIOLOGY

Evidence of horizontal gene transfer between amoeba and bacteria

(2009) C. Moliner et al.   CLINICAL MICROBIOLOGY AND INFECTION

Prevalence of Genes Encoding the Type Three Secretion System and the Effectors AexT and AexU in the Aeromonas veronii Group

(2009) Adam C. Silver et al.   DNA AND CELL BIOLOGY

Letting Escherichia coli Teach Me About Genome Engineering

(2009) James A. Shapiro   GENETICS

The Genome of the Amoeba Symbiont "Candidatus Amoebophilus asiaticus" Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria

(2009) S. Schmitz-Esser et al.   JOURNAL OF BACTERIOLOGY

Dynamics of Adaptive Microevolution of HypermutablePseudomonas aeruginosaduring Chronic Pulmonary Infection in Patients with Cystic Fibrosis

(2009) Christina Hoboth et al.   JOURNAL OF INFECTIOUS DISEASES

Where future emerging pathogens will come from and what approaches can be used to find them, besides VFARs

(2009) Mark D. Sobsey et al.   JOURNAL OF WATER AND HEALTH

Genome-wide analysis of DNA repeats in Burkholderia cenocepacia J2315 identifies a novel adhesin-like gene unique to epidemic-associated strains of the ET-12 lineage

(2009) D. Mil-Homens et al.   MICROBIOLOGY-SGM

Darwinian evolution in the light of genomics

(2009) E. V. Koonin   NUCLEIC ACIDS RESEARCH

Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism

(2009) Renee M. Tsolis et al.   PLoS One

Acanthamoeba castellanii Promotes the Survival of Vibrio parahaemolyticus

(2008) M. A. Laskowski-Arce et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative analysis of the Photorhabdus luminescens and the Yersinia enterocolitica genomes: uncovering candidate genes involved in insect pathogenicity

(2008) Ralf Heermann et al.   BMC GENOMICS

The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen

(2008) Michael E Reith et al.   BMC GENOMICS

Glutathione transferases in bacteria

(2008) Nerino Allocati et al.   FEBS Journal

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae

(2008) Carsten Matz et al.   ISME Journal

Role of xenobiotic transporters in bacterial drug resistance and virulence

(2008) Kunihiko Nishino et al.   IUBMB LIFE

Aeromonas–Acanthamoeba interaction and early shift to a viable but nonculturable state of Aeromonas by Acanthamoeba

(2008) M. Rahman et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients

(2008) M. T. G. Holden et al.   JOURNAL OF BACTERIOLOGY

Genetic Adaptation of Pseudomonas aeruginosa to the Airways of Cystic Fibrosis Patients Is Catalyzed by Hypermutation

(2008) A. Mena et al.   JOURNAL OF BACTERIOLOGY

Recovery of Herbaspirillum Species from Persons with Cystic Fibrosis

(2008) T. Spilker et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Prevention of hospital-acquired infections: review of non-pharmacological interventions

(2008) L.T. Curtis   JOURNAL OF HOSPITAL INFECTION

Dynamics of Pseudomonas aeruginosa genome evolution

(2008) K. Mathee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads

(2008) Steven L. Salzberg et al.   PLoS Computational Biology

Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants

(2008) Sophie Gaudriault et al.   GENOME BIOLOGY

Genera and species in acetic acid bacteria

(2007) Yuzo Yamada et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY