Rapid metabolic analysis of Rhodococcus opacus PD630 via parallel 13 C-metabolite fingerprinting

Large-Scale13C Flux Profiling Reveals Conservation of the Entner-Doudoroff Pathway as a Glycolytic Strategy among Marine Bacteria That Use Glucose

(2015) Arne Klingner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of inhibitory compounds in lignocellulosic hydrolysates on Mortierella isabellina growth and carbon utilization

(2015) Zhenhua Ruan et al.   BIORESOURCE TECHNOLOGY

A roadmap for interpreting 13 C metabolite labeling patterns from cells

(2015) Joerg M Buescher et al.   CURRENT OPINION IN BIOTECHNOLOGY

Methods and advances in metabolic flux analysis: a mini-review

(2015) Maciek R. Antoniewicz   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Integrated 13 C-metabolic flux analysis of 14 parallel labeling experiments in Escherichia coli

(2015) Scott B. Crown et al.   METABOLIC ENGINEERING

Engineering l -arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production

(2015) Kazuhiko Kurosawa et al.   METABOLIC ENGINEERING

Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration

(2015) Chiam Yu Ng et al.   METABOLIC ENGINEERING

De novodesign of heat-repressible RNA thermosensors inE. coli

(2015) Allison Hoynes-O'Connor et al.   NUCLEIC ACIDS RESEARCH

Quantifying Biomass Composition by Gas Chromatography/Mass Spectrometry

(2014) Christopher P. Long et al.   ANALYTICAL CHEMISTRY

Induction and carbon catabolite repression of phenol degradation genes in Rhodococcus erythropolis and Rhodococcus jostii

(2014) Juraj Szőköl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Cultivation of lipid-producing bacteria with lignocellulosic biomass: Effects of inhibitory compounds of lignocellulosic hydrolysates

(2014) Baixin Wang et al.   BIORESOURCE TECHNOLOGY

Triacylglycerol accumulation and oxidative stress in Rhodococcus species: differential effects of pro-oxidants on lipid metabolism

(2014) Susana Bequer Urbano et al.   EXTREMOPHILES

Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for 13 C metabolic flux analysis

(2014) Jennifer Au et al.   METABOLIC ENGINEERING

A novel platform for automated high-throughput fluxome profiling of metabolic variants

(2014) Stéphanie Heux et al.   METABOLIC ENGINEERING

Elucidation of intrinsic biosynthesis yields using 13C-based metabolism analysis

(2014) Arul M Varman et al.   Microbial Cell Factories

Engineering of Serine-Deamination pathway, Entner-Doudoroff pathway and pyruvate dehydrogenase complex to improve poly(3-hydroxybutyrate) production in Escherichia coli

(2014) Yan Zhang et al.   Microbial Cell Factories

CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics

(2014) Zhengdong Zhang et al.   NUCLEIC ACIDS RESEARCH

Publishing 13C metabolic flux analysis studies: A review and future perspectives

(2013) Scott B. Crown et al.   METABOLIC ENGINEERING

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis

(2013) V. Chubukov et al.   Molecular Systems Biology

Glycolytic strategy as a tradeoff between energy yield and protein cost

(2013) A. Flamholz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints

(2012) J. K.-H. Tang et al.   Journal of the Royal Society Interface

Parallel labeling experiments and metabolic flux analysis: Past, present and future methodologies

(2012) Scott B. Crown et al.   METABOLIC ENGINEERING

Selective Utilization of Exogenous Amino Acids by Dehalococcoides ethenogenes Strain 195 and Its Effects on Growth and Dechlorination Activity

(2011) Wei-Qin Zhuang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ald of Mycobacterium tuberculosis Encodes both the Alanine Dehydrogenase and the Putative Glycine Dehydrogenase

(2011) M. M. Giffin et al.   JOURNAL OF BACTERIOLOGY

Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

(2011) Jamey D. Young et al.   METABOLIC ENGINEERING

Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development

(2011) Jason W. Holder et al.   PLoS Genetics

Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis

(2009) Yinjie J. Tang et al.   BIOTECHNOLOGY LETTERS

Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?

(2009) Hal Alper et al.   NATURE REVIEWS MICROBIOLOGY

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189

(2009) Patrick F. Suthers et al.   PLoS Computational Biology

Global Response to Desiccation Stress in the Soil Actinomycete Rhodococcus jostii RHA1

(2008) J. C. LeBlanc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Differences of heterotrophic 13CO2 assimilation by Pseudomonas knackmussii strain B13 and Rhodococcus opacus 1CP and potential impact on biomarker stable isotope probing

(2008) Stefan Feisthauer et al.   ENVIRONMENTAL MICROBIOLOGY