Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints
Authors
Keywords
-
Journal
Journal of the Royal Society Interface
Volume 9, Issue 76, Pages 2767-2780
Publisher
The Royal Society
Online
2012-08-15
DOI
10.1098/rsif.2012.0396
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Global Investigation of the Bacillus subtilis Iron-Sparing Response Identifies Major Changes in Metabolism
- (2012) G. T. Smaldone et al. JOURNAL OF BACTERIOLOGY
- Computational tools for metabolic engineering
- (2012) Wilbert B. Copeland et al. METABOLIC ENGINEERING
- Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
- (2012) J. M. Buescher et al. SCIENCE
- Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection
- (2012) Thilo M. Fuchs et al. Frontiers in Microbiology
- Evaluation of isotope discrimination in 13C-based metabolic flux analysis
- (2011) Xueyang Feng et al. ANALYTICAL BIOCHEMISTRY
- Subpopulation-Specific Metabolic Pathway Usage in Mixed Cultures as Revealed by Reporter Protein-Based13C Analysis
- (2011) Martin Rühl et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Selective Utilization of Exogenous Amino Acids by Dehalococcoides ethenogenes Strain 195 and Its Effects on Growth and Dechlorination Activity
- (2011) Wei-Qin Zhuang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Novel sterol metabolic network ofTrypanosoma bruceiprocyclic and bloodstream forms
- (2011) Craigen R. Nes et al. BIOCHEMICAL JOURNAL
- Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of 13C metabolic flux analysis
- (2011) Martin Rühl et al. BIOTECHNOLOGY AND BIOENGINEERING
- Fluxomers: a new approach for 13C metabolic flux analysis
- (2011) Orr Srour et al. BMC Systems Biology
- Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1
- (2011) Rémi Peyraud et al. BMC Systems Biology
- Identification and Characterization of a Re-Citrate Synthase in Dehalococcoides Strain CBDB1
- (2011) E. Marco-Urrea et al. JOURNAL OF BACTERIOLOGY
- Characterization of Central Carbon Metabolism ofStreptococcus pneumoniaeby Isotopologue Profiling
- (2011) Tobias Härtel et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Ethylmalonyl-CoA Pathway Is Used in Place of the Glyoxylate Cycle byMethylobacterium extorquensAM1 during Growth on Acetate
- (2011) Kathrin Schneider et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolite channeling and compartmentation in the human cell line AGE1.HN determined by 13C labeling experiments and 13C metabolic flux analysis
- (2011) Jens Niklas et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- Dynamic metabolic flux analysis (DMFA): A framework for determining fluxes at metabolic non-steady state
- (2011) Robert W. Leighty et al. METABOLIC ENGINEERING
- Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis
- (2011) Jamey D. Young et al. METABOLIC ENGINEERING
- Capturing Metabolite Channeling in Metabolic Flux Phenotypes
- (2011) T. C. R. Williams et al. PLANT PHYSIOLOGY
- The Tricarboxylic Acid Cycle in Cyanobacteria
- (2011) S. Zhang et al. SCIENCE
- Calvin Cycle Flux, Pathway Constraints, and Substrate Oxidation State Together Determine the H2 Biofuel Yield in Photoheterotrophic Bacteria
- (2011) J. B. McKinlay et al. mBio
- Fumarate Reductase Activity Maintains an Energized Membrane in Anaerobic Mycobacterium tuberculosis
- (2011) Shinya Watanabe et al. PLoS Pathogens
- 13C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation
- (2011) Dany J. V. Beste et al. PLoS Pathogens
- Carbon Metabolic Pathways in Phototrophic Bacteria and Their Broader Evolutionary Implications
- (2011) Kuo-Hsiang Tang et al. Frontiers in Microbiology
- Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?
- (2010) Georg Fuchs Annual Review of Microbiology
- Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
- (2010) Fahimeh Salimi et al. Biotechnology Journal
- Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis
- (2010) Scott B. Crown et al. Biotechnology Journal
- Metabolomics of Mycobacterium tuberculosis Reveals Compartmentalized Co-Catabolism of Carbon Substrates
- (2010) Luiz Pedro S. de Carvalho et al. CHEMISTRY & BIOLOGY
- Pyruvate Carboxylase Plays a Crucial Role in Carbon Metabolism of Extra- and Intracellularly Replicating Listeria monocytogenes
- (2010) J. Schar et al. JOURNAL OF BACTERIOLOGY
- Alternative Route for Glyoxylate Consumption during Growth on Two-Carbon Compounds by Methylobacterium extorquens AM1
- (2010) Y. Okubo et al. JOURNAL OF BACTERIOLOGY
- Carbon Flow of Heliobacteria Is Related More toClostridiathan to the Green Sulfur Bacteria
- (2010) Kuo-Hsiang Tang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolism of Pentose Sugars in the Hyperthermophilic ArchaeaSulfolobus solfataricusandSulfolobus acidocaldarius
- (2010) Charlotte E. M. Nunn et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur BacteriumChlorobaculum tepidum
- (2010) Xueyang Feng et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- 13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry
- (2010) Yongbo Yuan et al. METABOLIC ENGINEERING
- Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light
- (2010) X. Feng et al. MICROBIOLOGY-SGM
- Branched tricarboxylic acid metabolism in Plasmodium falciparum
- (2010) Kellen L. Olszewski et al. NATURE
- Carbon metabolism of intracellular bacterial pathogens and possible links to virulence
- (2010) Wolfgang Eisenreich et al. NATURE REVIEWS MICROBIOLOGY
- 13C-Tracer and Gas Chromatography-Mass Spectrometry Analyses Reveal Metabolic Flux Distribution in the Oleaginous Microalga Chlorella protothecoides
- (2010) W. Xiong et al. PLANT PHYSIOLOGY
- Carbon Metabolism of Enterobacterial Human Pathogens Growing in Epithelial Colorectal Adenocarcinoma (Caco-2) Cells
- (2010) Andreas Götz et al. PLoS One
- Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria
- (2010) J. B. McKinlay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gluconeogenic carbon flow of tricarboxylic acid cycle intermediates is critical for Mycobacterium tuberculosis to establish and maintain infection
- (2010) J. Marrero et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis
- (2009) X. Feng et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis
- (2009) Yinjie J. Tang et al. BIOTECHNOLOGY LETTERS
- Novel biological insights through metabolomics and 13C-flux analysis
- (2009) Nicola Zamboni et al. CURRENT OPINION IN MICROBIOLOGY
- Investigation of Carbon Metabolism in "Dehalococcoides ethenogenes" Strain 195 by Use of Isotopomer and Transcriptomic Analyses
- (2009) Y. J. Tang et al. JOURNAL OF BACTERIOLOGY
- OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis
- (2009) Lake-Ee Quek et al. Microbial Cell Factories
- Alternative isoleucine synthesis pathway in cyanobacterial species
- (2009) B. Wu et al. MICROBIOLOGY-SGM
- Automatic policing of biochemical annotations using genomic correlations
- (2009) Tzu-Lin Hsiao et al. Nature Chemical Biology
- 13C-based metabolic flux analysis
- (2009) Nicola Zamboni et al. Nature Protocols
- Profiling human gut bacterial metabolism and its kinetics using [U-13C]glucose and NMR
- (2009) Albert A. de Graaf et al. NMR IN BIOMEDICINE
- Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114
- (2009) Kuo-Hsiang Tang et al. PLoS One
- Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics
- (2009) R. Peyraud et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2fixation cycle inChloroflexus aurantiacus
- (2009) Jan Zarzycki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Isotopomer Distributions in Amino Acids from a Highly Expressed Protein as a Proxy for Those from Total Protein
- (2008) Afshan S. Shaikh et al. ANALYTICAL CHEMISTRY
- Directed Evolution of Methanococcus jannaschii Citramalate Synthase for Biosynthesis of 1-Propanol and 1-Butanol by Escherichia coli
- (2008) S. Atsumi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- 13C labeling experiments at metabolic nonstationary conditions: An exploratory study
- (2008) Sebastian Wahl et al. BMC BIOINFORMATICS
- Elucidation of an Alternate Isoleucine Biosynthesis Pathway in Geobacter sulfurreducens
- (2008) C. Risso et al. JOURNAL OF BACTERIOLOGY
- Pathway identification combining metabolic flux and functional genomics analyses: Acetate and propionate activation by Corynebacterium glutamicum
- (2008) Andrea Veit et al. JOURNAL OF BIOTECHNOLOGY
- Advances in analysis of microbial metabolic fluxes via13C isotopic labeling
- (2008) Yinjie J. Tang et al. MASS SPECTROMETRY REVIEWS
- Biosynthesis of aspergiolide A, a novel antitumor compound by a marine-derived fungus Aspergillus glaucus via the polyketide pathway
- (2008) Kejing Tao et al. TETRAHEDRON LETTERS
- An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
- (2007) Jamey D. Young et al. BIOTECHNOLOGY AND BIOENGINEERING
- Metabolic flux analysis inEscherichia coli by integrating isotopic dynamic and isotopic stationary13C labeling data
- (2007) Jochen Schaub et al. BIOTECHNOLOGY AND BIOENGINEERING
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now