Phylogenetic Systematics of the Water Toad (Bufo stejnegeri) Elucidates the Evolution of Semi-aquatic Toad Ecology and Pleistocene Glacial Refugia

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Phylogeography reveals an ancient cryptic radiation in East-Asian tree frogs (Hyla japonica group) and complex relationships between continental and island lineages

(2016) Christophe Dufresnes et al.   BMC EVOLUTIONARY BIOLOGY

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

(2016) Robert Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad ( Bombina orientalis )

(2016) Jonathan J. Fong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Historical biogeography resolves the origins of endemic Arabian toad lineages (Anura: Bufonidae): Evidence for ancient vicariance and dispersal events with the Horn of Africa and South Asia

(2015) Daniel M. Portik et al.   BMC EVOLUTIONARY BIOLOGY

Do missing data influence the accuracy of divergence-time estimation with BEAST?

(2015) Yuchi Zheng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

The complete mitochondrial genome of the Rana huanrensis (Anura: Ranidae)

(2015) Bingjun Dong et al.   Mitochondrial DNA Part A

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

DNA barcode reference data for the Korean herpetofauna and their applications

(2013) Tae Jin Jeong et al.   Molecular Ecology Resources

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A phylogeographic, demographic and historical analysis of the short-tailed pit viper (Gloydius brevicaudus): evidence for early divergence and late expansion during the Pleistocene

(2011) LI DING et al.   MOLECULAR ECOLOGY

Integrating biodiversity distribution knowledge: toward a global map of life

(2011) Walter Jetz et al.   TRENDS IN ECOLOGY & EVOLUTION

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Nuclear and chloroplast DNA phylogeography reveal two refuge areas with asymmetrical gene flow in a temperate walnut tree from East Asia

(2010) Wei-Ning Bai et al.   NEW PHYTOLOGIST

Gradual Adaptation Toward a Range-Expansion Phenotype Initiated the Global Radiation of Toads

(2010) I. Van Bocxlaer et al.   SCIENCE

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Phylogeography and Demographic History of Chinese Black-Spotted Frog Populations (Pelophylax nigromaculata): Evidence for Independent Refugia Expansion and Secondary Contact

(2008) Hua Zhang et al.   BMC EVOLUTIONARY BIOLOGY