Article
Biochemistry & Molecular Biology
Hafiza Javaria Ashraf, Luis Carlos Ramos Aguila, Sohail Ahmed, Inzamam Ul Haq, Hina Ali, Muhammad Ilyas, Shuangyue Gu, Liande Wang
Summary: The study conducted a comprehensive analysis of the molecular response of T. radiata to heat stress, revealing that heat stress significantly induced the transcription of key genes related to molecular chaperones, immune responses, and other important pathways.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
(2022)
Article
Entomology
Di Luo, Qian Liu, Jinfeng Wang, Roman Jashenko, Rong Ji
Summary: This study investigated the molecular mechanisms and differences in high temperature tolerance between Calliptamus italicus and Gomphocerus sibiricus. The transcriptomic response of the two locust species displayed different patterns, with heat shock protein genes being highly expressed under high-temperature stress. The fluorescence results confirmed the accuracy of the transcriptome results.
ENVIRONMENTAL ENTOMOLOGY
(2023)
Article
Multidisciplinary Sciences
Eleonora Porcu, Marie C. Sadler, Kaido Lepik, Chiara Auwerx, Andrew R. Wood, Antoine Weihs, Maroun S. Bou Sleiman, Diogo M. Ribeiro, Stefania Bandinelli, Toshiko Tanaka, Matthias Nauck, Uwe Volker, Olivier Delaneau, Andres Metspalu, Alexander Teumer, Timothy Frayling, Federico A. Santoni, Alexandre Reymond, Zoltan Kutalik
Summary: Identification of gene expression changes between healthy and diseased individuals can reveal mechanistic insights and biomarkers. The bi-directional transcriptome-wide Mendelian Randomization approach was proposed to assess causal effects between gene expression and complex traits. Comparing transcript levels between healthy and diseased individuals allows for the identification of differentially expressed genes that may be causes, consequences or mere correlates of the disease under scrutiny.
NATURE COMMUNICATIONS
(2021)
Article
Multidisciplinary Sciences
Dongbo Zhao, Fengju Gao, Peiyan Guan, Jiansheng Gao, Zhihui Guo, Jianjun Guo, Huini Cui, Yongjun Li, Guijun Zhang, Zhao Li, Lianghai Guo
Summary: In this study, a systematic analysis of trihelix transcription factors was conducted in the maize genome. It was found that 11 genes in this family were regulated by heat stress, and they were unevenly distributed on different chromosomes. Furthermore, variations in protein length, molecular weight, and isoelectric point were observed in the encoded proteins. The expression levels of ZmTHs were significantly altered under heat and drought stresses.
Article
Biochemistry & Molecular Biology
Byeong Hee Kang, Woon Ji Kim, Sreeparna Chowdhury, Chang Yeok Moon, Sehee Kang, Seong-Hoon Kim, Sung-Hwan Jo, Tae-Hwan Jun, Kyung Do Kim, Bo-Keun Ha
Summary: This study identified genes related to salt stress in cowpea by comparing germplasms with contrasting salt tolerance. The results provide useful information for the development of molecular markers in cowpea breeding programs.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Multidisciplinary Sciences
Dipayan Das, Subires Bhattacharyya, Monidipa Bhattacharyya, Puja Sashankar, Arindam Ghosh, Palash Mandal
Summary: This study investigates the molecular expression patterns and differentially expressed genes (DEGs) related to the extension of mulberry leaf shelf-life. The results provide insights into the molecular mechanisms involved in shelf-life extension, which could help address existing issues in the sericulture industry.
SCIENTIFIC REPORTS
(2022)
Article
Forestry
Kaikai Zhu, Lu Wei, Wenjuan Ma, Xiaoli Hu, Juan Zhao, Pengpeng Tan, Hui Liu, Gang Feng, Pinghua Fan, Fangren Peng
Summary: This study analyzed the transcriptome data of pecan trees under drought stress and identified thousands of differentially expressed genes (DEGs) involved in the response to drought. The study also provided insights into the functions of these drought-responsive genes and the molecular basis of pecan's drought stress response.
Article
Obstetrics & Gynecology
Ashley W. Tiegs, Shiny Titus, Sameet Mehta, Rolando Garcia-Milian, Emre Seli, Richard T. Scott
Summary: The study found differential gene expression in cumulus cells from monosomy 21 and trisomy 21 embryos compared to euploid cumulus cells, with certain genes implicated in embryo developmental competence being differentially expressed in both conditions. Additionally, ingenuity pathway analysis showed that cell-cell contact function is affected in both monosomy and trisomy 21 cumulus cells, supporting the use of cumulus cell gene expression analysis as a potential tool for evaluating oocyte quality.
REPRODUCTIVE BIOMEDICINE ONLINE
(2021)
Article
Biochemistry & Molecular Biology
Soraya Mousavi, Roberto Mariotti, Maria Cristina Valeri, Luca Regni, Emanuele Lilli, Emidio Albertini, Primo Proietti, Daniela Businelli, Luciana Baldoni
Summary: This study evaluated the salt tolerance of four olive cultivars and identified key genes involved in salt stress response. The results showed that Koroneiki was the most salt-tolerant cultivar, while Fadak86 and Picual were the most susceptible ones. The expression analysis of candidate genes suggested the important roles of OeNHX7, OeP5CS, OeRD19A, and OePetD in activating a salt tolerance mechanism.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Agriculture, Dairy & Animal Science
Wenqian Jia, Lei Wu, Zhong Zhuang, Minghong Xu, Yijia Lu, Zhixiu Wang, Hao Bai, Guohong Chen, Guobin Chang, Yong Jiang
Summary: This study investigated the molecular mechanism of threonine regulation on breast muscle development in Pekin ducks. The results showed that threonine intake level affected body weight and breast fiber size in Pekin ducks, and regulated the expression of many genes. This study provides new insights into the molecular mechanisms underlying breast muscle development in ducks.
Article
Chemistry, Physical
Shoujing Zhu, Wenyang Li, Suhui Yan, Wenjuan Shi
Summary: Transcriptome sequencing was performed to investigate the molecular mechanisms of BnMYB2 in regulating Cd response in ramie. The results showed that the expression of genes related to transcription factors, plant hormone signal transduction, and nitrogen metabolism were significantly up-regulated in the BnMYB2 overexpressed lines. The increased expression of Ib subgroup bHLH genes and nitrogen assimilation-related genes was accompanied by elevated iron and total nitrogen content in the shoot. Additionally, several DEGs belonging to the bZIP transcription factor family or SAUR family were also found up-regulated in the transgenic plants. These findings provide important insights into the understanding of Cd stress response in ramie.
Article
Horticulture
Quan-Hui Li, Shi-Peng Yang, Ya-Nan Yu, Abid Khan, Peng-Long Feng, Muhammad Ali, Deng-kui Shao, Ya-Yi Wang, Rui-Xing Zhang, Wen-Xian Gai, Rui Han, Xiao Ma, Quan-Gang Hou, Zhen-Hui Gong
Summary: The color formation of red and orange pepper fruits is closely related to the composition and content of carotenoids, with significantly higher levels of zeaxanthin, beta-cryptoxanthin, beta-carotene, and capsanthin found in red peppers compared to orange peppers, and higher levels of lutein in orange peppers compared to red peppers. Differentially expressed genes (DEGs) were identified to be involved in the biosynthesis of carotenoids, phenylpropanoids, flavonoids, and phenylalanine metabolism. Key genes such as CHYB1 and CCS were found to play significant roles in carotenoid biosynthesis during fruit development. Additionally, transcription factors such as F-box protein SKIP23, GATA transcription factor 26, and others may be involved in the regulation of carotenoid metabolism pathway in pepper fruit color formation.
SCIENTIA HORTICULTURAE
(2021)
Article
Plant Sciences
Dong-ru Kang, Yi Zhu, Shuai-lei Li, Peng-hui Ai, Muhammad Ayoub Khan, Hong-xu Ding, Ying Wang, Zi-cheng Wang
Summary: This study investigates the effect of MET1 gene silencing on gene expression profile in Chrysanthemum x morifolium 'Zijingling', revealing significant changes in differentially expressed genes related to essential plant biological processes. While a sufficient number of candidate genes associated with flowering were identified, the overall number of genes with significant differences between transgenic and control lines was relatively low. This study sheds light on the transcriptional level interference of CmMET1 on chrysanthemum growth and development, providing a basis for further research on epigenetic regulation mechanisms in flower induction and development.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
(2021)
Article
Biochemistry & Molecular Biology
Xiaokang Han, Dingyu Zhang, Haibo Hao, Yong Luo, Ziwei Zhu, Benke Kuai
Summary: This study investigates the molecular mechanism of heat-stress-induced leaf senescence in maize seedlings. By screening different inbred lines, the researchers identified genes and pathways associated with heat stress response, reactive oxygen species, and photosynthesis. Furthermore, they found that silencing the ZmbHLH51 gene inhibits heat-stress-induced senescence in maize leaves. This research provides valuable insights into the understanding of heat stress and senescence in maize.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Cell Biology
Yongxin Zhang, Wenwei Liu, Wei Feng, Xiaofeng Wang, Tianxiang Lei, Zehong Chen, Wu Song
Summary: This study identified characteristic changes of metabolism-related genes in gastric cancer patients through proteomics and RNA sequencing, providing potential new biomarkers and therapeutic targets for GC. The dysregulation of metabolic genes, including BCAT2, was associated with immune cell infiltration and overall survival time in GC patients. The findings offer comprehensive information to better understand the mechanism underlying GC metastasis and explore potential targets for therapeutic and prognostic purposes.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Agriculture, Dairy & Animal Science
Qingyuan Ouyang, Shenqiang Hu, Bincheng Tang, Bo Hu, Jiwei Hu, Hua He, Liang Li, Jiwen Wang
Summary: The low egg production of geese compared with chicken and duck limits the industry's development, but their yolk weight and fatty liver susceptibility are higher. The relationship between lipid metabolism and the laying performance of geese remains to be explored. Our research suggests that lipid metabolism regulated by the circadian rhythm of the liver may affect ovarian function through inflammation and hormone secretion of abdominal fat.
Article
Agriculture, Dairy & Animal Science
Xin Zhang, Yan Deng, Shenqiang Hu, Xinyue Hu, Jiaming Ma, Jiwei Hu, Bo Hu, Hua He, Liang Li, Hehe Liu, Jiwen Wang
Summary: The present study compared the amino acid (AA) content and gene expression levels related to protein synthesis in the breast muscle of different duck breeds/strains. The results showed significant differences in the content of certain AAs among the breeds/strains. The breast muscle of Jianchang duck (J) and BH2 had higher AA content compared to other breeds/strains, which might be associated with the expression levels of specific genes.
Article
Agriculture, Dairy & Animal Science
D. Deng, W. Li, L. Li, X. Yuan, J. Wang, C. Han, S. Hu
Summary: The full-length 2,496 bp coding sequence of PRLR was obtained from Sichuan White goose for the first time, encoding a polypeptide of 831 amino acids. qPCR results showed that the mRNA levels of PRLR increased during early folliculogenesis and were higher in secondary follicles compared to primordial ones. The expression of PRLR mRNA in cultured granulosa cells varied depending on the stage of follicle development. These findings provide new insights into the role of PRLR in goose ovarian follicle development.
BRITISH POULTRY SCIENCE
(2023)
Article
Agriculture, Dairy & Animal Science
Shenqiang Hu, Yujing Rong, Yan Deng, Li Li, Jiwei Hu, Xin Yuan, Hua He, Liang Li, Jiwen Wang
Summary: This study investigated the expression profiles and functions of miR-27b-3p in goose ovarian follicle development. It was found that miR-27b-3p was highly expressed in hierarchical follicles and could regulate estrogen secretion in granulosa cells. The downstream target of miR-27b-3p, CYP1B1, was identified and found to be involved in the AMPK signaling pathway.
Article
Agriculture, Dairy & Animal Science
Qingyuan Ouyang, Shenqiang Hu, Qingliang Chen, Shuai Xin, Zhiyu He, Jiwei Hu, Bo Hu, Hua He, Hehe Liu, Liang Li, Jiwen Wang
Summary: This study identifies molecular markers and mechanisms related to egg production in geese, specifically highlighting the role of the ATP1A1 gene in follicle selection and maturation processes.
Article
Agriculture, Dairy & Animal Science
Zhiyu He, Qingliang Chen, Qingyuan Ouyang, Jiwei Hu, Zhengyang Shen, Bo Hu, Shenqiang Hu, Hua He, Liang Li, Hehe Liu, Jiwen Wang
Summary: This study compared the transcriptome profiles of thyroid and ovarian stroma between high and low egg production ducks, and identified pathways and candidate genes involved in ovarian development and egg-laying process. Through integrated analysis of protein-protein interaction network and KEGG pathway maps, 9 key genes that play crucial roles in regulating thyroid-ovary axis and egg-laying performance were identified.
Article
Agriculture, Dairy & Animal Science
Mingxia Ran, Shenqiang Hu, Qingyuan Ouyang, Hengli Xie, Xi Zhang, Yueyue Lin, Xuejian Li, Jiwei Hu, Liang Li, Hua He, Hehe Liu, Jiwen Wang
Summary: This study investigated the effects of miR-202-5p, which undergoes expression changes during follicular development, on lipid metabolism and steroidogenesis in goose hierarchical follicular granulosa cells. The results showed that miR-202-5p significantly inhibited lipid deposition and steroid hormone production in goose granulosa cells via ACSL3. These findings highlight the important role of miR-202-5p in regulating granulosa cell functions and its potential as a target for molecular breeding.
Article
Biotechnology & Applied Microbiology
Yang Xi, Qifan Wu, Yutian Zeng, Jingjing Qi, Junpeng Li, Hua He, Hengyong Xu, Jiwei Hu, Xiping Yan, Lili Bai, Chunchun Han, Shenqiang Hu, Jiwen Wang, Hehe Liu, Liang Li
Summary: This study performed a genome wide association study to identify the genetic basis of growth rate in ducks. They found 41 significant SNPs related to growth rate, with ASAP1 and LYN genes being important candidate genes. The study also showed that growth rate can be used as a reliable predictor of adult weight.
Article
Agriculture, Dairy & Animal Science
Xinyue Hu, Lipeng Zhu, Qingyuan Ouyang, Junqi Wang, Jiwei Hu, Bo Hu, Shenqiang Hu, Hua He, Liang Li, Hehe Liu, Jiwen Wang
Summary: This study aimed to compare the semen quality of drakes with different levels of libido and identify the mechanisms regulating sperm motility by performing RNA-seq in the testis, epididymis, and spermaduct. The results showed that drakes with libido level 5 had significantly better sperm motility, testis weight, and epididymis organ index compared to drakes with libido level 4. Additionally, pathways related to metabolism, oxidative phosphorylation, immunity, proliferation, and signaling were significantly enriched in the testis, epididymis, and spermaduct. Several genes involved in protein digestion and absorption, cell cycle, Huntington disease, and PI3K-Akt signaling pathways were identified in the respective tissues. These findings provide new insights into the molecular mechanisms regulating sperm motility in drakes with different levels of libido.
Article
Genetics & Heredity
Jie Wang, Huimei Fan, Mianying Li, Kaisen Zhao, Siqi Xia, Yang Chen, Jiahao Shao, Tao Tang, Xue Bai, Zheliang Liu, Yusheng Lu, Xiangrui Chen, Wenqiang Sun, Xianbo Jia, Songjia Lai
Summary: Selecting suitable feed types and understanding the gastrointestinal digestive mechanism are helpful for the growth and health of calves. The effects of different feed types on rumen development are still unclear. The TMR diet improves rumen digestive enzyme activities, stimulates rumen nutrient absorption, and promotes rumen growth and development more than the GF and GFF diets.
Article
Agriculture, Dairy & Animal Science
Xianbo Jia, Yang He, Zhe Kang, Shiyi Chen, Wenqiang Sun, Jie Wang, Songjia Lai
Summary: This study investigates the fecal microbiome composition between primiparous and multiparous cows during non-pregnancy and pregnancy to analyze the host-microbial balance at different stages. The results indicate that host-microbial interactions promote adaptation to pregnancy and will benefit the development of probiotics or fecal transplantation for treating dysbiosis and preventing disease development during pregnancy.
Article
Veterinary Sciences
Zhou-lin Wu, Xue Yang, Jiamin Zhang, Wei Wang, Dayu Liu, Bo Hou, Ting Bai, Rui Zhang, Yin Zhang, Hanyang Liu, Hongwen Hu, Yunhong Xia
Summary: This study investigated the effects of different forages on growth performance, carcass traits, meat nutritional composition, rumen microflora, and the relationships between key bacteria and amino acids and fatty acids in goats. The results showed that goats fed forage maize had higher essential amino acid content and increased beneficial fatty acids in their meat. Rumen microbiota was significantly associated with the nutritional composition of goat meat, with stronger correlations in the semimembranosus muscles. These findings demonstrate that different forages can alter carcass traits, meat nutritional composition, and rumen microflora, and forage maize can improve the nutritional value of meat.
FRONTIERS IN VETERINARY SCIENCE
(2023)
Article
Microbiology
Jie Wang, Kaisen Zhao, Mianying Li, Huimei Fan, Meigui Wang, Siqi Xia, Yang Chen, Xue Bai, Zheliang Liu, Jiale Ni, Wenqiang Sun, Xianbo Jia, Songjia Lai
Summary: This study aimed to investigate the molecular regulation mechanism of three feeding patterns for Chinese Holstein calves and their effects on rumen fermentation function and growth performance. The results showed that the "GF" feeding pattern had more beneficial effects on rumen morphology, contents physiology, and microorganisms, leading to better growth of calves.
Article
Agriculture, Dairy & Animal Science
Guanhe Chen, Wenqiang Sun, Yuchao Li, Mengze Li, Xianbo Jia, Jie Wang, Songjia Lai
Summary: Heat stress is a key challenge for the dairy industry due to global warming. MiR-196a plays a role in the organism's response to heat stress by promoting cell proliferation and mitigating cellular stress. This study reveals that miR-196a protects bovine mammary epithelial cells against heat stress-induced proliferation arrest by inhibiting the target gene CDKN1B.
Article
Biochemistry & Molecular Biology
Tao Tang, Genglong Jiang, Jiahao Shao, Meigui Wang, Xiaoxiao Zhang, Siqi Xia, Wenqiang Sun, Xianbo Jia, Jie Wang, Songjia Lai
Summary: This study reveals that MSTRG4710 positively regulates cell proliferation and adipogenesis through the miR-29b-3p/IGF1 axis. These findings have important implications for studying adipogenesis in rabbit preadipocytes and obesity.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)