Probing Carbon Utilization of Cordyceps militaris by Sugar Transportome and Protein Structural Analysis

Crystal structure of the plant symporter STP10 illuminates sugar uptake mechanism in monosaccharide transporter superfamily

(2019) Peter Aasted Paulsen et al.   Nature Communications

Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes

(2019) David S. Milner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative metabolic routes in channeling xylose to cordycepin production of Cordyceps militaris identified by comparative transcriptome analysis

(2019) Boontariga Wongsa et al.   GENOMICS

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

(2019) Jan Stourac et al.   NUCLEIC ACIDS RESEARCH

Characterization of a novel sugar transporter involved in sugarcane bagasse degradation in Trichoderma reesei

(2018) Karoline M. V. Nogueira et al.   Biotechnology for Biofuels

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Uncovering global metabolic response to cordycepin production in Cordyceps militaris through transcriptome and genome-scale network-driven analysis

(2018) Nachon Raethong et al.   Scientific Reports

In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics

(2018) Mao Peng et al.   Frontiers in Microbiology

Genome-Wide Analysis, Expression Profile, and Characterization of the Acid Invertase Gene Family in Pepper

(2018) Long-Bin Shen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

PubChem 2019 update: improved access to chemical data

(2018) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Cordycepin promotes browning of white adipose tissue through an AMP-activated protein kinase (AMPK)-dependent pathway

(2018) Guihong Qi et al.   Acta Pharmaceutica Sinica B

Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei

(2016) Jasper Sloothaak et al.   Biotechnology for Biofuels

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

(2015) Konstantinos D. Tsirigos et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

The construction of an amino acid network for understanding protein structure and function

(2014) Wenying Yan et al.   AMINO ACIDS

Biotechnological production and applications ofCordyceps militaris, a valued traditional Chinese medicine

(2014) Jian Dong Cui   CRITICAL REVIEWS IN BIOTECHNOLOGY

g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations

(2014) Rashmi Kumari et al.   Journal of Chemical Information and Modeling

Residue interaction network analysis of Dronpa and a DNA clamp

(2014) Guang Hu et al.   JOURNAL OF THEORETICAL BIOLOGY

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Functional architecture of MFS D-glucose transporters

(2014) M. G. Madej et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

(2013) Leif Väremo et al.   NUCLEIC ACIDS RESEARCH

Rewiring yeast sugar transporter preference through modifying a conserved protein motif

(2013) E. M. Young et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A putative α-glucoside transporter gene BbAGT1 contributes to carbohydrate utilization, growth, conidiation and virulence of filamentous entomopathogenic fungus Beauveria bassiana

(2013) Xiu-Xiu Wang et al.   RESEARCH IN MICROBIOLOGY

Blockade of adipocyte differentiation by cordycepin

(2012) Shuhei Takahashi et al.   BRITISH JOURNAL OF PHARMACOLOGY

A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae

(2012) Eric M. Young et al.   METABOLIC ENGINEERING

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

(2012) Eva Chovancova et al.   PLoS Computational Biology

Analyzing and visualizing residue networks of protein structures

(2011) Nadezhda T. Doncheva et al.   TRENDS IN BIOCHEMICAL SCIENCES

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Medicinal uses of the mushroom Cordyceps militaris: Current state and prospects

(2010) Shonkor Kumar Das et al.   FITOTERAPIA

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Secondary metabolites from entomopathogenic Hypocrealean fungi

(2010) István Molnár et al.   NATURAL PRODUCT REPORTS

Mrt, a Gene Unique to Fungi, Encodes an Oligosaccharide Transporter and Facilitates Rhizosphere Competency in Metarhizium robertsii

(2010) W. Fang et al.   PLANT PHYSIOLOGY

CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

(2009) Sunhwan Jo et al.   BIOPHYSICAL JOURNAL

Probing hot spots on protein-protein interfaces with all-atom free-energy simulation

(2009) Irene Meliciani et al.   JOURNAL OF CHEMICAL PHYSICS

CCL5 increases lung cancer migration via PI3K, Akt and NF-κB pathways

(2008) Chun-Yin Huang et al.   BIOCHEMICAL PHARMACOLOGY

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY