Metagenomic insights into seasonal variations in the soil microbial community and function in a Larix gmelinii forest of Mohe, China

Metagenomic analysis of microbial community and function involved in cd-contaminated soil

(2018) Gang Feng et al.   BMC MICROBIOLOGY

Role of Heat Shock Proteases in Quorum-Sensing-Mediated Regulation of Biofilm Formation by Vibrio Species

(2018) Kyung-Jo Lee et al.   mBio

Metagenomic insights into effects of spent engine oil perturbation on the microbial community composition and function in a tropical agricultural soil

(2017) Lateef B. Salam et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Metagenomic and Culture-Dependent Analysis of the Bacterial Diversity of a Hot Spring Reservoir as a Function of the Seasonal Variation

(2017) B. A. Kikani et al.   International Journal of Environmental Research

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Metagenomic Insights into Effects of Chemical Pollutants on Microbial Community Composition and Function in Estuarine Sediments Receiving Polluted River Water

(2016) Xiao-Ming Lu et al.   MICROBIAL ECOLOGY

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Plant diversity increases soil microbial activity and soil carbon storage

(2015) Markus Lange et al.   Nature Communications

Cold Plasma Inactivation of Bacterial Biofilms and Reduction of Quorum Sensing Regulated Virulence Factors

(2015) Dana Ziuzina et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Wet deposition flux and runoff output flux of mercury in a typical small agricultural watershed in Three Gorges Reservoir areas

(2014) Zheng Zhao et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Gene prediction in metagenomic fragments based on the SVM algorithm

(2013) Yongchu Liu et al.   BMC BIOINFORMATICS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

(2011) Mads Albertsen et al.   ISME Journal

Modeling soil metabolic processes using isotopologue pairs of position-specific 13C-labeled glucose and pyruvate

(2011) Paul Dijkstra et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Shifting cultivation effects on soil fungi and bacterial population in Chittagong Hill Tracts, Bangladesh

(2010) Sohag Miah et al.   JOURNAL OF FORESTRY RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS