Transcript profiling reveals potential regulators for oxidative stress response of a necrotrophic chickpea pathogen Ascochyta rabiei

The BioGRID interaction database: 2019 update

(2018) Rose Oughtred et al.   NUCLEIC ACIDS RESEARCH

Elevated catalase expression in a fungal pathogen is a double-edged sword of iron

(2017) Arnab Pradhan et al.   PLoS Pathogens

The Magnaporthe oryzae nitrooxidative stress response suppresses rice innate immunity during blast disease

(2017) Margarita Marroquin-Guzman et al.   Nature Microbiology

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

(2016) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire

(2016) Sandhya Verma et al.   Scientific Reports

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

(2015) Jianguo Xia et al.   Nature Protocols

Reactive oxygen species and plant resistance to fungal pathogens

(2015) Silke Lehmann et al.   PHYTOCHEMISTRY

A “footprint” of plant carbon fixation cycle functions during the development of a heterotrophic fungus

(2015) Xueliang Lyu et al.   Scientific Reports

Contribution of Fdh3 and Glr1 to Glutathione Redox State, Stress Adaptation and Virulence in Candida albicans

(2015) Anna T. Tillmann et al.   PLoS One

Reactive oxygen and nitrogen (ROS and RNS) species generation and cell death in tomato suspension cultures—Botrytis cinerea interaction

(2014) E. Pietrowska et al.   PROTOPLASMA

Pepper Arginine Decarboxylase Is Required for Polyamine and  -Aminobutyric Acid Signaling in Cell Death and Defense Response

(2013) N. H. Kim et al.   PLANT PHYSIOLOGY

FSRD: fungal stress response database

(2013) Z. Karanyi et al.   Database-The Journal of Biological Databases and Curation

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Comparative Transcriptome Analysis of the Necrotrophic Fungus Ascochyta rabiei during Oxidative Stress: Insight for Fungal Survival in the Host Plant

(2012) Kunal Singh et al.   PLoS One

The Ustilago maydis Effector Pep1 Suppresses Plant Immunity by Inhibition of Host Peroxidase Activity

(2012) Christoph Hemetsberger et al.   PLoS Pathogens

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Expression of the fluorescent proteins DsRed and EGFP to visualize early events of colonization of the chickpea blight fungus Ascochyta rabiei

(2010) Shadab Nizam et al.   CURRENT GENETICS

The flavohemoglobin BCFHG1 is the main NO detoxification system and confers protection against nitrosative conditions but is not a virulence factor in the fungal necrotroph Botrytis cinerea

(2010) Juan Luis Turrion-Gomez et al.   FUNGAL GENETICS AND BIOLOGY

Functional analysis of the superoxide dismutase family inAspergillus fumigatus

(2010) Karine Lambou et al.   MOLECULAR MICROBIOLOGY

The Basic Leucine Zipper Transcription Factor Moatf1 Mediates Oxidative Stress Responses and Is Necessary for Full Virulence of the Rice Blast FungusMagnaporthe oryzae

(2010) Min Guo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Nitric Oxide as a Partner of Reactive Oxygen Species Participates in Disease Resistance to Necrotrophic Pathogen Botrytis cinerea in Nicotiana benthamiana

(2009) Shuta Asai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Molecular mechanisms of generation for nitric oxide and reactive oxygen species, and role of the radical burst in plant immunity

(2009) Hirofumi Yoshioka et al.   MOLECULES AND CELLS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

MAPK Signaling Regulates Nitric Oxide and NADPH Oxidase-Dependent Oxidative Bursts in Nicotiana benthamiana

(2008) S. Asai et al.   PLANT CELL

New Insights into Nitric Oxide Signaling in Plants

(2007) Angélique Besson-Bard et al.   Annual Review of Plant Biology