Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations
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Title
Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations
Authors
Keywords
-
Journal
Journal of Animal Science and Biotechnology
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-02-03
DOI
10.1186/s40104-019-0407-9
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Note: Only part of the references are listed.- Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations
- (2019) Xiao Wang et al. Journal of Animal Science and Biotechnology
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- (2017) Younes Miar et al. JOURNAL OF DAIRY SCIENCE
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- (2016) Cameron Palmer et al. PLoS Genetics
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- (2015) E.C.G. Pimentel et al. JOURNAL OF DAIRY SCIENCE
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- (2015) Sithembile O. Makina et al. Frontiers in Genetics
- Imputation of missing genotypes from low- to high-density SNP panel in different population designs
- (2014) S. He et al. ANIMAL GENETICS
- A new approach for efficient genotype imputation using information from relatives
- (2014) Mehdi Sargolzaei et al. BMC GENOMICS
- Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding
- (2014) Jiangfeng He et al. Frontiers in Plant Science
- Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions
- (2013) T Druet et al. HEREDITY
- Comparison of different methods for imputing genome-wide marker genotypes in Swedish and Finnish Red Cattle
- (2013) P. Ma et al. JOURNAL OF DAIRY SCIENCE
- Genotyping-by-Sequencing (GBS): A Novel, Efficient and Cost-Effective Genotyping Method for Cattle Using Next-Generation Sequencing
- (2013) Marcos De Donato et al. PLoS One
- An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle
- (2012) CHUANYU SUN et al. Genetics Research
- Effect of marker-data editing on the accuracy of genomic prediction
- (2012) V. Edriss et al. JOURNAL OF ANIMAL BREEDING AND GENETICS
- Reliability of genomic prediction for German Holsteins using imputed genotypes from low-density chips
- (2012) D. Segelke et al. JOURNAL OF DAIRY SCIENCE
- Genotyping-by-Sequencing for Plant Breeding and Genetics
- (2012) Jesse A. Poland et al. Plant Genome
- Imputation of genotypes from low- to high-density genotyping platforms and implications for genomic selection
- (2011) D. P. Berry et al. Animal
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Preliminary investigation on reliability of genomic estimated breeding values in the Danish Holstein population
- (2010) G. Su et al. JOURNAL OF DAIRY SCIENCE
- Marker imputation with low-density marker panels in Dutch Holstein cattle
- (2010) Z. Zhang et al. JOURNAL OF DAIRY SCIENCE
- A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
- (2009) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- QMSim: a large-scale genome simulator for livestock
- (2009) M. Sargolzaei et al. BIOINFORMATICS
- Selection of single-nucleotide polymorphisms and quality of genotypes used in genomic evaluation of dairy cattle in the United States and Canada
- (2009) G.R. Wiggans et al. JOURNAL OF DAIRY SCIENCE
- Invited review: Genomic selection in dairy cattle: Progress and challenges
- (2009) B.J. Hayes et al. JOURNAL OF DAIRY SCIENCE
- A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies
- (2009) Bryan N. Howie et al. PLoS Genetics
- Invited Review: Reliability of genomic predictions for North American Holstein bulls
- (2008) P.M. VanRaden et al. JOURNAL OF DAIRY SCIENCE
- Analyses and Comparison of Accuracy of Different Genotype Imputation Methods
- (2008) Yu-Fang Pei et al. PLoS One
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