Soil Bacterial and Fungal Communities Exhibit Distinct Long-Term Responses to Disturbance in Temperate Forests

Bacterial metataxonomic profile and putative functional behavior associated with C and N cycle processes remain altered for decades after forest harvest

(2018) Ryan M. Mushinski et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organic matter removal associated with forest harvest leads to decade scale alterations in soil fungal communities and functional guilds

(2018) Ryan M. Mushinski et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbial response to Rhododendron understory removal in southern Appalachian forests: Effects on extracellular enzymes

(2018) Ernest D. Osburn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of forest degradation on microbial communities and soil carbon cycling: A global meta-analysis

(2017) Zhenghu Zhou et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Changing patterns of daily precipitation totals at the Coweeta Hydrologic Laboratory, North Carolina, USA

(2017) T. P. Burt et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Evidence for a Regime Shift in Nitrogen Export from a Forested Watershed

(2016) J. R. Webster et al.   ECOSYSTEMS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Effect of Harvest on Forest Soil Carbon: A Meta-Analysis

(2016) Jason James et al.   Forests

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Long term repeated fire disturbance alters soil bacterial diversity but not the abundance in an Australian wet sclerophyll forest

(2016) Ju-pei Shen et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Soil fungal communities respond compositionally to recurring frequent prescribed burning in a managed southeastern US forest ecosystem

(2015) Alena K. Oliver et al.   FOREST ECOLOGY AND MANAGEMENT

Soil C and N storage and microbial biomass in US southern pine forests: Influence of forest management

(2015) J.A. Foote et al.   FOREST ECOLOGY AND MANAGEMENT

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems

(2015) Kezia Goldmann et al.   Frontiers in Microbiology

pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils

(2014) Barbara Stempfhuber et al.   MICROBIAL ECOLOGY

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

Land-use change: incorporating the frequency, sequence, time span, and magnitude of changes into ecological research

(2013) Simon J Watson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

The mycorrhizal-associated nutrient economy: a new framework for predicting carbon-nutrient couplings in temperate forests

(2013) Richard P. Phillips et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Substrate and nutrient limitation of ammonia-oxidizing bacteria and archaea in temperate forest soil

(2013) J.S. Norman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Anthropogenic transformation of the terrestrial biosphere

(2011) E. C. Ellis   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties

(2011) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Land-use Pressure and a Transition to Forest-cover Loss in the Eastern United States

(2010) Mark A. Drummond et al.   BIOSCIENCE

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

The contribution of the Coweeta Hydrologic Laboratory to developing an understanding of long-term (1934–2008) changes in managed and unmanaged forests

(2010) Katherine J. Elliott et al.   FOREST ECOLOGY AND MANAGEMENT

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Quantification of global gross forest cover loss

(2010) M. C. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Riparian zones in southern Appalachian headwater catchments: Carbon and nitrogen responses to forest cutting

(2009) Jennifer D. Knoepp et al.   FOREST ECOLOGY AND MANAGEMENT

Soil carbon stocks in experimental mesocosms are dependent on the rate of labile carbon, nitrogen and phosphorus inputs to soils

(2008) M. A. Bradford et al.   FUNCTIONAL ECOLOGY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY