A large genomic insertion containing a duplicated follistatin gene is linked to the pea aphid male wing dimorphism

Gene Family Evolution in the Pea Aphid Based on Chromosome-Level Genome Assembly

(2019) Yiyuan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Disentangling the Causes for Faster-X Evolution in Aphids

(2018) Julie Jaquiéry et al.   Genome Biology and Evolution

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

(2018) Cervin Guyomar et al.   Microbiome

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

(2017) Chuan-Le Xiao et al.   NATURE METHODS

Ecdysone signaling underlies the pea aphid transgenerational wing polyphenism

(2017) Neetha Nanoth Vellichirammal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

Transcriptome Analysis of Green Peach Aphid (Myzus persicae): Insight into Developmental Regulation and Inter-Species Divergence

(2016) Rui Ji et al.   Frontiers in Plant Science

The evolution of life cycle complexity in aphids: Ecological optimization or historical constraint?

(2015) Nate B. Hardy et al.   EVOLUTION

Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)

(2015) Sangeet Lamichhaney et al.   NATURE GENETICS

Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

(2014) A Gouin et al.   HEREDITY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Male-specific flight apparatus development in Acyrthosiphon pisum (Aphididae, Hemiptera, Insecta): comparison with female wing polyphenism

(2012) Kota Ogawa et al.   ZOOMORPHOLOGY

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

(2011) P. Andolfatto et al.   GENOME RESEARCH

Macroevolutionary Patterns in the Aphidini Aphids (Hemiptera: Aphididae): Diversification, Host Association, and Biogeographic Origins

(2011) Hyojoong Kim et al.   PLoS One

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Follistatin preferentially antagonizes activin rather than BMP signaling inDrosophila

(2009) Jozsef Pentek et al.   GENESIS

A continuum of genetic divergence from sympatric host races to species in the pea aphid complex

(2009) J. Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Post-Pleistocene radiation of the pea aphid complex revealed by rapidly evolving endosymbionts

(2009) J. Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis

(2008) Dietmar Sommerfeld et al.   Future Generation Computer Systems-The International Journal of eScience

Drosophila Follistatin exhibits unique structural modifications and interacts with several TGF-β family members

(2007) Daniela Bickel et al.   MECHANISMS OF DEVELOPMENT